HKUCS Bioinformatics Algorithms and Core Technology Research Laboratory's repositories
Clair3-Trio
Clair3-Trio: variant calling in trio using Nanopore long-reads
MegaPath-Nano
MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read Metagenomics; MegaPath-Nano-Amplicon: filtering module for metagenomic amplicon data
Clair3-RNA
Clair3-RNA - a long-read small variant caller for RNA sequencing data
Translocator
Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long reads
Clairvoyante-PyTroch
Pytorch version of Clairvoyante
Clair3-Nova
de novo variant calling in trio using Nanopore long-reads
CellContrast
CellContrast: Reconstructing Spatial Relationships in Single-Cell RNA Sequencing Data via Deep Contrastive Learning
Chromatin-Fiber-Imaging
Chromatin Fiber Imaging
msdb-flask
Mirtronstructdb: A comprehensive database of mirtrons with predicted secondary structures