BeatsonLab-MicrobialGenomics

BeatsonLab-MicrobialGenomics's repositories

micropipe

A pipeline for high-quality bacterial genome construction using ONT sequencing

Language:HTMLGPL-3.038 9 7

SeqFindR

[MIRROR] A tool to easily create informative genomic feature plots

Language:PythonNOASSERTION800

BeatsonLab-MicrobialGenomics.github.io

Lab Website

Language:HTML400

ST131_99

Data for - Global dissemination of a multidrug resistant Escherichia coli clone

300

core-scripts

Core/generic bioinformatics scripts. Contains submodule links to all smaller script packages within the Beatson Microbial Genomics group

2 90

DiscoPlot

Visualising discordant reads

Language:PythonGPL-3.0200

ST131_200_Rscripts

R scripts for ST131_200 study

Language:R200

Contiguity

Tool for visualising assemblies.

Language:PythonGPL-3.0100

SeqFindr-D3.js

Generate dynamic SeqFindr plots using D3.js library

Language:JavaScript100

samplescript

Beatson Group sample/base python script

0110

TraDIS-Web-Portal

TraDIS data web portal

Language:RubyNOASSERTION000

CREATEQ_CPE

Assemblies for CREATE-Q CPE manuscript

000

Plasmid-barcodes

Generate barcode like images representing unique plasmid element hits from you NGS data

000

Prepublication-data-statement

Beatson Lab Prepublication data statement

020

samplemod

Beatson Group sample/base python project. This simple project is an example repo/bootstrap repo for python projects

Language:PythonNOASSERTION000

VFDB

[MIRROR] Virulence factors, other sequences of interest & Islands. For ST131 99 manuscript. SeqFindR formatted

Language:Python000