methylation-analysis

There are 1 repository under methylation-analysis topic.

• sirselim / illumina450k_filtering

  A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays

  methylation-microarraysmethylation-analysisbioinformaticsprobes
  27

• andreaskapou / scMET

  Bayesian modelling of DNA methylation heterogeneity at single-cell resolution

  bayesian-inferencegeneralised-linear-modelsmethylation-analysissingle-cellheterogeneityhierarchical-models
  Language:R 19

• ErickNavarroD / RAMEN

  Regional Association of Methylation variability with the Exposome and geNome (RAMEN) is an R package whose goal is to identify Variable Methylated Regions (VMRs) in microarray DNA methylation data. Additionally, using Genotype (G) and Environmental (E) data, it can identify which G, E, G+E or GxE model better explains this variability.

  exposomegenomemethylation-analysismethylation-microarraysmultiomicsr-packagebioinformatics-tooldna-methylation
  Language:R 4

• shitohana / BSXplorer

  Comprehensive tool for visualizing genome-wide cytosine data.

  bs-seqmethylationmethylation-analysisplottingvisualization
  Language:Python 4

• explcre / Adaptable-and-intrepretable-multi-task-learning-based-gene-level-methylation-estimation

  adaptable and intrepretable,multi-task learning based gene-level methylation estimations

  deep-learningbioinformaticsmethylation-analysismulti-task-learningadaptive-learningexplainable-artificial-intelligencepythonkerasrepresentation-learningautoencodertransfer-learningpytorch
  Language:Python 3

• GDelevoye / SMSN

  Re-implementation of J. Beaulaurier et al's SMSN strategy, using the default PacBio tools

  bioinformaticspipelineanalysismethylationmethylation-analysispacbio-sequencing
  Language:Python 3

• shubhamchandak94 / lossy_compression_evaluation

  Impact of lossy compression of nanopore raw signal data on basecall and consensus accuracy

  lossy-compressionnanopore-sequencingnanopore-analysis-pipelinebasecallingassemblyconsensus-algorithmmethylation-analysis
  Language:Jupyter Notebook 3

• AnaValente / DNA-methylation-analysis

  DNA methylation analysis pipeline for reduced representation bissulfite sequencing data

  methylationmethylation-analysisnextflowrrbsrrbs-data-analysisrrbs-pipeline
  Language:R 2
• IlluminaMouseMethylationmanifest

  chiaraherzog / IlluminaMouseMethylationmanifest

  This package provides Illumina Mouse Methylation Array Manifest (12.v1, Genome Build mm10) compatible with minfi.

  bioinformaticsillumina-bead-chipillumina-beadarraysmethylationmethylation-analysismethylation-annotationmethylation-microarraysmouse
  Language:R 2

• stjude-biohackathon / MethylMiner

  A methylation array analysis pipeline tailored for discovering rare methylation events with interactive data visualization

  bioinformatics-pipelinemethylation-analysismethylation-arrays
  Language:Python 2
• IlluminaMouseMethylationanno.12.v1.mm10

  chiaraherzog / IlluminaMouseMethylationanno.12.v1.mm10

  This package provides Illumina Mouse Methylation Array Annotation (12.v1, Genome Build mm10) compatible with minfi.

  bioinformaticsillumina-bead-chipmethylation-analysismethylation-annotationmethylation-arraysminfi
  Language:R 1

• DOnofrio-Irene / Analysis_Infinium_methylation_data

  This repository contains the project of the DNA/RNA Dynamics course of the MSc Bioinformatics at the University of Bologna. The project is about the analysis of methylation data generated from Illumina HumanMethylation450K Beadchip.

  methylation-analysisrmarkdownbioconductor-packagebioinformaticsminfir
  Language:R 1

• espositomario / DNA_methylation_Infinium_HM450

  This pipeline is designed for the analysis of DNA methylation data generated from the Illumina HumanMethylation450 BeadChip platform.

  bioinformaticsepigeneticsmethylation-analysisillumina
  Language:R 1

• GianlucaMattei / methyl.O

  Differentially methylated regions analysis

  methylated-regionsgene-expressionannotate-enhancersexpression-profilegenemethylationmethylation-analysisdmrs
  Language:R 1

• kerseviciute / persimmon

  Persimmon: DMR Finder

  dmrmethylation-analysisdifferentially-methylated-regions
  Language:R 1

• Maximvan / AHTAOmicsAnalysisPCOS

  Identification for Key Pathways and Genes in Polycystic Ovary Syndrome (PCOS) using a multi-omics approach, as part of the Applied High Throughput Analysis course at Ghent University

  high-throughput-data-analysishpcomicspcosrghent-universitymethylation-analysismicroarray-data-analysismulti-omicspolycystic-ovary-syndromerna-seq-analysis
  1

• miamib34ch / HSE-Bioinformatics

  Practical and home works in the discipline Bioinformatics.

  bioinformaticschromhmmgene-predictiongenetic-map-visualizationgenome-analysisgenome-annotationgenome-assemblyhi-chistone-modificationsmethylation-analysisphylogenetic-treesquadruplexesrna-seq-analysissequence-alignmentsingle-cell-rna-seqsnpspython
  Language:HTML 1

• pipaber / Epigenomics

  This is a repository to show my experience analyzing different kinds of epigenomics data.

  epigenomicsmethylation-analysisplotting
  Language:TeX 1

• bdecato / PMD_Paper_Scripts

  A repository containing code, data, and resource links for the publication "Characterization of universal features of partially methylated domains across tissues and species"

  pmdstrackhubmethylationmethylation-analysis
  Language:Shell 0

• grev-uv / hpg-msuite

  A powerful and friendly tool kit for methylation analysis of DNA

  fastq-analysisbam-mappermethylation-analysismethylated-dna
  Language:C++ 0

• marcDabad / snakemake_nanometh

  snakemake pipeline based on nanopolish

  nanoporenanopore-analysis-pipelinemethylation-analysis
  Language:Python 0

• tarsus-lam / tcga-multiomic

  Analyzing TCGA cohorts and multiomic data in R

  brcaclinical-datamethylation-analysismultiomicsmutation-analysisrna-seqtcga
  0

• wegnerce / smk_emseq

  Snakemake workflow for the processing of EMseq data

  bisulfite-sequencingemseqmethylationmethylation-analysissnakemake
  Language:Python 0

• dohlee / idat2beta

  Small minfi wrapper to convert IDAT files to beta values.

  bioinformaticsdna-methylationmethylation-analysis
  Language:R