rawhash

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RawHash
CMU-SAFARI / RawHash
RawHash is the first mechanism that can accurately and efficiently map raw nanopore signals to large reference genomes (e.g., a human reference genome) in real-time without using powerful computational resources (e.g., GPUs). Described by Firtina et al. (published at https://academic.oup.com/bioinformatics/article/39/Supplement_1/i297/7210440)
bioinformatics contamination event-detection genome-analysis hash-tables nanopore nanopore-analysis-pipeline nanopore-data nanopore-minion nanopore-reads nanopore-sequencing raw-signal read-mapping relative-abundances seeding segmentation raw-nanopore-signal-analysis rawhash
Language:C 39

CMU-SAFARI / RawHash