single-nucleotide-variation

There are 0 repository under single-nucleotide-variation topic.

MeHelmy / princess
long-reads structural-variation single-nucleotide-variation methylation phasing
Language:Python 79
gaolabtools / scNanoGPS
Single cell Nanopore sequencing data for Genotype and Phenotype
cell-barcode demultiplexing gene-expression isoforms long-read-sequencing nanopore-analysis-pipeline rna-seq-pipeline single-cell single-nucleotide-variation umi-curation
Language:Python 38
dbmi-bgm / granite
A collection of software to work with genomic variants
vcf variants variant-analysis trio de-novo-mutation compound-heterozygous de-novo-mutations variant-filtration snv snvs single-nucleotide-variation
Language:Python 6
davidhwyllie / findNeighbour2
Compares large numbers of bacterial sequences
rest-webservice bacterial-sequences relatedness single-nucleotide-variation
Language:Python 3
davidhwyllie / findNeighbour3
Bacterial relatedness server, supporting sequence clustering & mixture detection
relatedness rest-client rest-server single-nucleotide-variation clustering-algorithm bacterial-genomes mixed-infection
Language:Python 2
coldham10 / SCarborSNV
SCarborSNV is an efficient algorithm for phylogeny aware genotyping of single cell genomes, using dynamic programming and neighbor joining.
single-cell-genomics single-cell-sequencing single-nucleotide-variation phylogenetics
Language:C 1
alex137911 / BME499
Code for 4th year honours thesis project at the University of Waterloo.
bioinformatics high-performance-computing microbiome-analysis single-nucleotide-variation
Language:Shell
NCI-CGR / HPV_low_VAF_SNV_prediction
Predicting true low-VAF SNVs in HPV using triplicate NGS samples and machine learning
hpv machine-learning ngs-analysis single-nucleotide-variation ion-torrent extreme-gradient-boosting intrahost cancer-genomics intrahost-genetic-diversity snv variant-call-format variant-calling vcf vcf-files human-papillomavirus isnv vcfgenie
Language:Jupyter Notebook