shubhamchandak94

Spring

FASTQ compression

ProtographLDPC

Implementation of Protograph LDPC error correction codes

LFZip

Error bounded lossy compression of time series using prediction-quantization approach

HARC

Fastq compression

digital-puppetry

A novel streaming pipeline for reducing bandwidth consumption in video calling.

nanopore_dna_storage

DNA storage for nanopore sequencing using convolutional coding and basecaller-decoder integration

LDPC-codes

Software for Low Density Parity Check codes

stabilizer_code

Implementation of stabilizer codes in pyQuil

VT_codes

Python implementation of Varshamov-Tenengolts codes for correction of single insertion/deletion errors

LDPC_DNA_storage

LDPC codes for Illumina sequencing-based DNA storage

lossy_compression_evaluation

Impact of lossy compression of nanopore raw signal data on basecall and consensus accuracy

nanopore_dna_storage_data

Convolutional coding and basecaller-decoder integration for nanopore sequencing based DNA storage - data

LDPC_DNA_storage_data

LDPC codes for Illumina sequencing-based DNA storage - Data

ChannelCodingProjectList

List of open source channel coding projects and libraries.

shubhamchandak94.github.io

Personal website

template_python_server

beautiful-jekyll

:sparkles: Build a beautiful and simple website in literally minutes. Demo at http://deanattali.com/beautiful-jekyll

bioconda-recipes

Conda recipes for the bioconda channel.

bonito

Convolution Basecaller for Oxford Nanopore Reads

Fall22

fastq_denoising

Exploration of fastq denoising approaches for Illumina sequencing data

json

JSON for Modern C++

leveldb

LevelDB is a fast key-value storage library written at Google that provides an ordered mapping from string keys to string values.

libbsc

High performance block-sorting data compression library

pose-animator

qcat

qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.

single-edit-correcting-code

An order-optimal code that corrects a single edit in a quaternary alphabet

ThreadSafeDicts.jl

Thread safe Julia Dict

WebRTC-Example-RTCDataChannel

A dead simple WebRTC DataChannel example

webrtc-signaling-server