fast5

There are 0 repository under fast5 topic.

genomics
igordot / genomics
A collection of scripts and notes related to genomics and bioinformatics
bioinformatics genomics sequencing illumina fasta fastq gtf vcf nanopore dna science workflow fast5
Language:R 189
novoalab / modPhred
modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data
nanopore dna rna fast5 modifications guppy basecalling on-the-fly
Language:Python 14
Psy-Fer / fast5_fetcher
A tool for fetching nanopore fast5 files after filtering via demultiplexing, alignment, or other, to improve downstream processing efficiency
nanopore fast5
Language:Python 14
mbhall88 / fast5seek
Subset of fast5 files contained in a fastq, BAM, or SAM file.
nanopore bioinformatics fast5 bam sam fastq ont
Language:Python 11
bsaintjo / slow5-rs
Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
ffi nanopore-sequencing rust fast5 genomics nanopore oxford oxford-nanopore bioinformatics compbio computational-biology
Language:Rust 9
CMU-SAFARI / Molecules2Variations
The first work to provide a comprehensive survey of a prominent set of algorithmic improvement and hardware acceleration efforts for the entire genome analysis pipeline used for the three most prominent sequencing data, short reads (Illumina), ultra-long reads (ONT), and accurate long reads (HiFi). Described in arXiv (2022) by Alser et al. https://arxiv.org/abs/2205.07957
basecalling bioinformatics fast5 fasta fastq genome-analysis hifi illumina minimap2 needleman-wunsch quality-control read-mapping sam sequence-alignment sequencing smith-waterman variant-calling vcf wavefront-alignment wfa
8
rnajena / read5
Wrapper to read fast5, slow5, blow5 and pod5 files.
blow5 fast5 ont oxford-nanopore oxford-nanopore-data pod5 raw-data slow5
Language:Python 8
mbhall88 / tinysink
Synchronise Nanopore reads with a server.
oxford-nanopore bioinformatics-scripts fast5
Language:Shell 1
Shians / PorexploreR
Bob Loblaw's Law Blog Applauds Porexplorer
bioinformatics fast5 nanopore r
Language:R 1
JannesSP / read5.github.io
Documentation for the https://github.com/JannesSP/read5 repository
blow5 documentation fast5 oxford-nanopore pod5 slow5 read5
Language:HTML 0
rnajena / read5_ont
Wrapper to read fast5 and pod5 files.
fast5 ont oxford-nanopore oxford-nanopore-data pod5 raw-data
Language:Python 0

fast5

igordot / genomics

novoalab / modPhred

Psy-Fer / fast5_fetcher

mbhall88 / fast5seek

bsaintjo / slow5-rs

CMU-SAFARI / Molecules2Variations

rnajena / read5

mbhall88 / tinysink

Shians / PorexploreR

JannesSP / read5.github.io

rnajena / read5_ont