There are 0 repository under copy-number topic.
Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
Lifterover copy number segments in whole
High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants
Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data.
🔬 R package: Analysis of Large Affymetrix Microarray Data Sets
Probabilistic inference of somatic copy number alterations using repeat DNA (FAST-SeqS)
Software for Rapid Analyses of Human Copy Number Data
R package: Parent-specific Copy-number Estimation Pipeline using HT-Seq Data
CNprep Package - Pre-process DNA Copy Number (CN) Data for Detection of CN Events
KILDA (KIv2 Length Determined from a kmer Analysis) provides an alignment-free estimation of the number of KIV2 (Kringle IV type 2) repeats from FASTQ files.
Pipeline for running the FACETS copy number caller using Snakemake