RGLab

MAST

Tools and methods for analysis of single cell assay data in R

openCyto

A package that provides data analysis pipeline for flow cytometry.

ggcyto

Visualize Cytometry data with ggplot2

flowWorkspace

flowWorkspace

flowCore

Core flow cytometry infrastructure

CytoML

A GatingML Interface for Cross Platform Cytometry Data Sharing

FAUST

Full annotation using shape-constrained trees

ImmuneSpaceR

An R Interface to the ImmuneSpace database portal

flowStats

flowStats: algorithms for flow cytometry data analysis using BioConductor tools

covid19_sc

Processing workflow for COVID-19 single cell data

cytolib

c++ library for representing and interacting the gated cytometry data structure

flowClust

Bayesian flowClust

flowViz

Visualization for flow cytometry

COMPASS

Combinatorial Polyfunctionality Analysis of Single Cells

cytoqc

A Quality Control tool for cytometry

LabKeyModules

LabKey Modules for ImmuneSpace

RProtoBufLib

bundled Protocol buffers library as an R package

cytoUtils

Helper tools for cytometry

ncdfFlow

A package that provides ncdf based storage for flow cytometry data.

UITesting

ImmuneSpace UI Testing

cytoverse.org

HIPCMatrix

Utilities for processing and analyzing HIPC gene expression data in ImmuneSpace

ImmPortR

R wrapper around the ImmPort API and its download tool

ImmuneSignatures

HIPC ImmuneSignatures

ImmuneSignatures2

HIPC ImmuneSignatures2

AnalyteExplorer

Analyte Explorer Pre-processing Scripts

ImmuneSpaceCron

Tools and functions for generating useful artifacts for ImmuneSpace Reports and APIs

ImmuneSpaceMaintenance

Utility Package for ImmuneSpace Maintenance

MIMOSA2

Baseline Adjusted Positivity Calls for Intracellular Cytokine Staining Data

rcellontologymapping

R interface to generate leukocyte cell classifications from cell surface markers using the decision tree from Maecker et al. (2012)