Rafal Gumienny (guma44)

guma44

Geek Repo

Company:Novartis

Location:Basel, CH

Home Page:guma44.github.io

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Organizations
zavolanlab

Rafal Gumienny's repositories

GEOparse

Python library to access Gene Expression Omnibus Database (GEO)

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ushuffle

A useful tool for shuffling biological sequences while preserving the k-let counts

cookiecutter-django-cms-docker

A cookiecutter template for the django CMS using docker

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singularity

Singularity: Application containers for Linux

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.vim

My Vim configuration files

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.bash

My bash configuration files

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caper

Cromwell/WDL wrapper for Python

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croo

Cromwell output organizer

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django-modelcluster

Django extension to allow working with 'clusters' of models as a single unit, independently of the database

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django-rest-framework

Web APIs for Django. 🎸

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MetaProfile

Python package that facilitates making gene meta-profiles.

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NeighbourhoodMap

Udacity project for neighbourhood map - breweries and brewpubs in Basel area.

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pandas

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

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pisces

PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.

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pyCLIP

A python package to deal with CLIP/z files and structures

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simple-cython-example

A small project template that shows how to wrap C code into python using cython, along with other packaging concepts

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sublime-text-conf

A collection of Sublime Text Snippets

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wdl

Workflow Description Language - Specification and Implementations

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