affymetrix

There are 0 repository under affymetrix topic.

• BgeeDB / bgee_pipeline

  Source code of the Bgee pipeline used to build the Bgee database

  pipelineexpressiongenetranscriptomicsrna-seqin-situ-hybridizationaffymetrixestgene-expressionbiologyjavamakefileperlpython
  Language:Perl 11

• HenrikBengtsson / aroma.affymetrix

  🔬 R package: Analysis of Large Affymetrix Microarray Data Sets

  rpackageaffymetrixcopy-numberexpressiondnarnaanalysismicroarraylarge-scalereproducibilityhpcnotebook
  Language:R 10

• hernanmd / BioScripts

  A collection of miscellaneous bioinformatics scripts

  affymetrixilluminacnvshapeit2bioinformaticsbash
  Language:Smalltalk 2

• SiYangming / simpleaffy

  backup for https://www.bioconductor.org/packages/3.12/bioc/html/simpleaffy.html

  raffyaffymetrixbioinformatics
  Language:R 2

• cemordaunt / AutismCordBloodExpression

  Analysis of gene expression in umbilical cord blood from ASD, Non-TD, and TD subjects in the MARBLES and EARLI studies

  microarrayaffymetrixgene-expressionautismmeta-analysis
  Language:R 1

• CNuge / miscellaneous_scripts

  Various python programs I use for the manipulation of SNP genotype datasets and other bioinformatics tasks. This repository features miscellaneous scripts to help work efficiently in common bioinformatics tasks I encounter. Use at own risk

  snp-datasnp-genotype-datasetsbioinformatics-tasksmiscellaneous-scriptsmicroarray-datasnp-fileaffymetrixmicroarray-design
  Language:Python 1

• gustaveroussy / apt.cytoscan.2.4.0

  Affymetrix CytoScan (750k / HD) processing using apt-copynumber-cyto-ssa (2.4.0)

  affymetrixmicroarraynormalizationr
  Language:R 1

• gustaveroussy / apt.oncoscan.2.4.0

  Affymetrix OncoScan / OncoScan_CNV processing using apt-copynumber-onco-ssa (2.4.0)

  raffymetrixnormalizationmicroarray
  Language:R 1

• HenrikBengtsson / Affx-Fusion-SDK

  :microscope: Affymetrix Fusion Software Developers Kit (SDK)

  affymetrixsdk
  Language:C++ 1

• paulstothard / genotype_conversion_file_builder

  A pipeline for determining the genomic location and transformation rules for the variants described in Illumina or Affymetrix genotype panel manifest files.

  bioinformaticsnextflowilluminaaffymetrixgenotype-conversiongenotypes
  Language:Perl 1

• roman-tremmel / Affymetrix-HTA2.0-Transcript-cluster-annotation

  App to illustrate the history of transcript cluster annotations of the Affy array HTA2.0

  affymetrixhta2transcriptidprobeannotationshinyapp
  Language:R 1

• tpoorten / leaf_print

  R scripts & functions for SNP data analysis of genotyping data from Affymetrix Axiom arrays

  rsnpsaffymetrix
  Language:R 1

• uribalb / genex

  Gene expression experiments using Python and R

  pythonrjupytertensorflowgenomicsdeep-learningpipelinesdata-scienceaffymetrixgene-expressionpandasdask
  Language:HTML 1

• anedicksh / GenesetPCA-on-gene-expression-data-in-prion-infected-mice

  principal-component-analysispcamicroarray-data-analysisaffymetrixarrayexpress
  Language:R 0

• cnr-ibba / SMARTER-database

  Smarter database repository

  affymetrixbreedingdatabaseefficiencygenotypeplinkresilienceruminantsmarter
  Language:Jupyter Notebook 0

• oheil / AffyCelFiles.jl

  read Affymetrix .CEL files

  affyaffymetrixmicroarraythermofishercelcel-filesmicroarrays
  Language:Julia 0

• xindong95 / DEAP

  Differential Expression Analysis Pipeline

  affymetrixbiologyilluminamicroarraypipelinernaseqsnakemake
  Language:Python 0

• zqzneptune / affyio

  Updated version to handle CEL files

  microarrayaffymetrix
  Language:C 0

• fboulnois / made

  Microarray Analysis of Differential Expression

  rmicroarrayaffymetrixilluminagenomedifferential-expression
  Language:R

• genepattern / AffySTExpressionFileCreator

  Creates a GCT file from a set of CEL files from Affymetrix ST arrays.

  genepattern-modulepreprocessutilityaffymetrix
  Language:R

• gustaveroussy / apt.snp6.1.20.0

  Affymetrix GenomeWideSNP_6 processing using apt-copynumber-workflow (1.20.0)

  raffymetrixnormalizationmicroarray
  Language:R

• hernanmd / SSNPs_WCF2018

  Find shared SNPs between different microarray chips

  microarraysilluminaaffymetrixsnpsbioinformaticsbash
  Language:Shell

• xlxs4 / r-openblas-ci

  The fruits of my labor to get OpenBLAS to work with R and fix the p_thread22() error in affy::rma()

  affyaffymetrixblasdockeropenblasrrenvrma
  Language:Dockerfile