gene-regulatory-network-inference

There are 1 repository under gene-regulatory-network-inference topic.

clreda / NORDic
Network-Oriented Repurposing of Drugs Python Package
bandit-algorithm boolean-network drug-repurposing gene-regulatory-network gene-regulatory-network-inference drug-simulation
Language:Jupyter Notebook 6
calebclayreagor / DELAY
Depicting pseudotime-lagged causality for accurate gene-regulatory inference
gene-regulation deep-learning single-cell multi-omics gene-regulatory-network-inference gene-regulatory-networks
Language:Python 5
pdmoerland / SingleCellNotes
Links to interesting courses, tutorials, papers, software etc. related to single-cell omics data analysis
single-cell trajectory-inference pseudotime-estimation spatial-transcriptomics gene-regulatory-network-inference cell-cell-interaction
5
viktormiok / PhD-thesis
Latex scripts to compile my PhD thesis
multivariate-timeseries splines ridge-regression rna-seq microarray cervical-cancer gene-regulatory-network-inference
Language:TeX 5
JBris / nextflow-graph-machine-learning
A Nextflow pipeline demonstrating how to train graph neural networks for gene regulatory network reconstruction using DREAM5 data.
deep-learning graph-neural-network graph-neural-networks nextflow nextflow-pipeline nextflow-pipelines docker docker-compose gene-regulatory-network gene-regulatory-network-inference gene-regulatory-networks dream5 machine-learning minio mlflow mlops graphsage variational-autoencoder variational-inference
Language:Python 3
AntoinePassemiers / PORTIA
A Lightning-fast algorithm for Gene Regulatory Network inference from gene expression data
gene-regulatory-network-inference gaussian-graphical-models power-transforms end-to-end-machine-learning
Language:Python 2
vksriharsha / Causal-Inference-on-Gene-Expression-Data
Python implementation of the PCA-CMI algorithm proposed by Zhang et al. and comparison of the results with the IC algorithm to predict gene regulatory network skeleton and edge orientations.
causal-inference gene-regulatory-network-inference python bioinformatics machine-learning
Language:Jupyter Notebook 2
JBris / dream5_grn_data
Gold standard gene regulatory network data from the DREAM5 challenge.
gene-network gene-network-inference gene-network-reconstruction gene-regulatory-network gene-regulatory-network-inference genomics network
1
Stfort52 / NOLAN
TENET refined
gene-regulatory-network gene-regulatory-network-inference pseudotime single-cell single-cell-rna-seq transfer-entropy
Language:Python