Bohdan-Khomtchouk

Bohdan Khomtchouk's repositories

shinyheatmap

Web application for enormous biological heatmaps

Language:RGPL-3.063 11 13

Biochat

Natural language processing of Gene Expression Omnibus data

Language:Common LispMIT49 7 16

fastheatmap

Super high performance interactive heatmap software

Language:JavaScriptGPL-3.029 9 4

PubData

Smart search engine for all bioinformatics databases worldwide

Language:Python27 10 9

biosemble

AI assembly of bioNLP wordnets

Language:PythonGPL-3.019 3 2

HeatmapGenerator

Cross-platform GUI desktop application for making biological heatmaps

Language:C19 5 2

FTPwalker

PyPI package for traversing extremely large FTP directory trees

Language:Python17 4 4

NERO-nlp

NERO-nlp is a PyPI package for biomedical Named Entity (Recognition) Ontology

Language:Python10 3 1

geneXtendeR

R/Bioconductor package for optimized functional annotation of ChIP-seq data

Language:R9 4 5

ageBioPortal

R Shiny web application for aging-related diseases

Language:RMIT7 7 2

cardioinformatics

Cardioinformatics: the nexus of bioinformatics and precision cardiology

Language:TeX7 40

codon-usage

Machine learning scripts/analyses to accompany manuscript entitled "Codon usage bias levels predict taxonomic identity and genetic composition" (for code re-use/reproducibility purposes)

Language:Jupyter NotebookMIT3 30

Gaussian-distributed-codon-frequencies-of-genomes

Source code to accompany manuscript entitled "Gaussian-distributed codon frequencies of genomes" (Khomtchouk & Nonner, 2019)

Language:DGPL-2.03 30

happybiRthday

Calculate upcoming birthday dates of Github repos

Language:RNOASSERTION3 30

NGStoolkit

One-stop shop for one-click NGS analyses from the command-line

Language:ShellGPL-3.03 30

ENCODE_histone_geneXtendeR_analysis

geneXtendeR analysis on 198 human histone modification ChIP-seq ENCODE datasets

Language:RMIT2 30

peaX

Human ChIP-seq peaks data for ENCODE and ROADMAP Epigenomics

Language:RMIT2 3 1

SUPERmerge

Diffuse ChIP-seq coverage island analysis algorithms

Language:CGPL-3.02 30

Triglav

Variant calling format (vcf) file genomics pipeline for HPC and cloud

Language:CGPL-3.02 30

Bohdan-Khomtchouk.github.io

Bohdan Khomtchouk's personal website

Language:HTML1 3 1

ENCODE_TF_geneXtendeR_analysis

geneXtendeR analysis on 547 ENCODE ChIP-seq datasets for both proximal and distal transcription factor (TF) binding peaks for all cell types

Language:RMIT1 30

MovieSceneGiffer

An automated and more advanced and quick way of generating movie gifs

Language:Python1 20

statement

Research statement et al.

1 20

AR-prototype

Language:C++040

book-errata-community-service

My contributions towards improving modern machine learning literature

030

kmh-dbgap-utils

Some helpers for dealing with dbgap xmls

Language:PythonApache-2.0020

memor

rmarkdown template that supports customizable logo, company info, etc.

Language:TeX030

polyreg

Language:R030

reproducibility

03 1

rstudio-conf

Materials for rstudio::conf

Language:HTML030