htseq

There are 0 repository under htseq topic.

• guma44 / GEOparse

  Python library to access Gene Expression Omnibus Database (GEO)

  geo-databasehigh-throughput-sequencinghtseqmicroarraybioinformaticsrna-sequencingrna-seq
  Language:Jupyter Notebook 130

• datasnakes / htseq-count-cluster

  A cli for running multiple qsub jobs with HTSeq's htseq-count on a cluster.

  cliclusterhtseqhtseq-counthtseq-count-clusterrnaseqsge
  Language:Python 4

• datasnakes / RNASeek

  A shiny app to perform single and multifactor differential analysis using DESeq2, edgeR, and limma

  count-tabledeseq2htseqrrna-seqrnaseqshinyshiny-apps
  Language:HTML 2

• nyuhuyang / RNAseq_pipeline

  Pipeline of somatic variant analysis using Waldenstrom macroglobulinemia patient’s RNA-seq data, including tools like STAR, HTseq, VarScan in parallel computing in SGE clusters, Deseq2 and GSEA in R

  rna-seq-analysisdeseq2htseqsamtoolsvarscan
  Language:HTML 2

• yejg2017 / Sequence-Mapping-Bio

  This is a code tutorial for rna or dna sequence mapping by myself-RyanYip

  bowtie2fastqcfeaturecountshtseqmultiqcsalmonstar
  Language:Shell 2

• bixBeta / xcode.beta

  SLURM job temps @UALBANY

  staralignmentbioinformatics-scriptsbioinformaticshtseqhtseq-countualbanyslurmsbatch
  Language:Shell 1

• gih0004 / RNA_seq_pipeline

  RNA seq pipeline designed for paired end reads using HTSEQ for producing files needed for visualizing transcriptomic data with DESEQ2

  htseqhtseq-countrna-seqrna-seq-analysisrna-seq-pipeline
  Language:Shell 0

• UCSF-Costello-Lab / LG3_Pipeline

  The original LG3 pipeline

  htseq
  Language:Shell 0

• busraata / gwsta-2020-HTSeq-TSS-plot-tutorial

  HTSeq TSS plot tutorial

  htseqtss-plot

• Fatemehrshd / RNA-Seq-Analysis

  bioinformaticsfastqchisathtseqhtseq-countrread-mappingrna-sequencingsamtoolstrimmomatic
  Language:Jupyter Notebook

• mattgalbraith / htseq2-docker-singularity

  Build Docker container for HTSeq and (optionally) convert to Apptainer/Singularity

  apptainerbioinformaticsdockergenomicshtseqhtseq-countsequencingsingularity
  Language:Dockerfile