OpenMS

OpenMS

The codebase of the OpenMS project

autowrap

Generates Python Extension modules from Cythons PXD files

pyopenms-docs

pyOpenMS readthedocs documentation, additional utilities, addons, scripts, and examples.

Tutorials

Tutorials as used in the user meetings. (Please assign a git tag for the revision used for the UM)

streamlit-template

MassBankUpdate

.github

OpenMS organization public GitHub profile repository

build-scripts

Holds the scripts for setting up basic platform specific (but machine independent) environments to build OpenMS for different purposes.

de.openms.knime

Nodes etc. related to OpenMS

dockerfiles

This repository holds Dockerfiles for creating docker images for several OpenMS configurations based on different base images.

OpenMS-docs

OpenMS Documentation.

usage_plots

Scripts for generating plots about the usage of OpenMS

workflows

KNIME workflows for use with OpenMS.

THIRDPARTY

External binary dependencies (e.g. search engine binaries) packaged in installers

windows-installer

Former Windows Installer of OpenMS based on NSIS

contrib

Automated CMake build scripts for the OpenMS contrib libraries

bioconda-recipes

Conda recipes for the bioconda channel.

cling-notebooks

contrib-sources

Holds the packaged sources of chosen and tested versions of most of our needed contrib libraries.

images

Additional files (logos, splash screen, icons)

MetaboProfiler

Community Node for Compound Discoverer

NSIS

A ready-to-use NSIS with 8k strings support and ModernUI

OpenMS-1

The codebase of the OpenMS project

OpenMS-website

Hugo sources for the OpenMS website

openms.github.io

Code for our new webpage

PDCommunityNodes

Community nodes for Thermo Proteome Discoverer

scientific-python-hugo-theme

Hugo theme based on the design for numpy.org

streamlit-deployment

Streamlit deployment with Docker

updateHMDB

Script to update OpenMS' internal HMDB database