lazear

sage

Proteomics search & quantification so fast that it feels like magic

types-and-programming-languages

Exercises from Benjamin Pierce's "Types and Programming Languages" textbook + extras!

axum-aws-lambda

Seamlessly use Axum on AWS Lambda

mz_parquet

simd-euclidean

Calculation of euclidean distance between vectors, with SIMD

dbscan

Dependency free implementation of DBSCAN clustering in Rust

sage-rts

trainmuck

A fast and simple optimizing brainfuck compiler

census

High performance Rust library for parsing, filtering, and manipulating multiplexed proteomics data

census2csv

Convert TMT multiplexed proteomics data in the Census format to CSV files

proteomics-tutorial

timsrust

adventofcode2020

Solutions to Advent of Code 2020

adventofcode2022

My solutions to Advent of Code 2022 in Haskell

adventofcode2023

blogs

Repositories for Code Associated with Blog Posts on PIRL Website

haskell-exercises

lucille

mlton

The MLton repository

nightingale

Data visualisation web components for the life sciences.

ProteoBench

psm

Shotgun proteomics search engine

psm_utils

Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python

rust-analyzer

An experimental Rust compiler front-end for IDEs

sage-pyo3

Python bindings to the Sage proteomics search engine

sdrf-pipelines

A repository to convert SDRF proteomics files into pipelines config files

SIO

SIO coding language! (Selective Introspection Order)

ThermoRawFileParser

Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono

peak-performance

A Python toolbox for Bayesian inference of peak areas.

QuantCompare