Will Fondrie's repositories
depthcharge
A deep learning toolkit for mass spectrometry
asms-ml-short-course
Links and meterials for the ASMS machine learning short course.
2023_asms-depthcharge
Notebooks to accompany my ASMS poster on Depthcharge
msstats-demo
A demonstration of using MSstats in Python
cookiecutter-python-package
A template for new Python packages
meth-modifications
XML-based Method Modifications
2024_depthcharge-demos
Demos to accompany our depthcharge manuscript
bioconda-recipes
Conda recipes for the bioconda channel.
cloudpathlib-feedstock
A conda-smithy repository for cloudpathlib.
comet-mokapot-flashflq_example
An example of using Comet + Mokapot + FlashLFQ to analyze DDA proteomics data.
conda-forge-pinning-feedstock
A conda-smithy repository for conda-forge-pinning.
count-org-loc
Count total lines of code across a GitHub organization
hugo-marmot
A minimalist, monospace Hugo theme.
personal-website
My personal website
rich-click
Format click help output nicely with rich.
snakemake-beer-proteomics
A Snakemake tutorial workflow using the recent ABRF beer proteomics study.
2023_advent-of-code
My solutions for AoC 2023.
ushupo-ml-short-course
Lab excerises for the introduction to ML short course at the US Hupo annual conference.