lc-ms

There are 1 repository under lc-ms topic.

ElucidataInc / ElMaven
LC-MS data processing tool for large-scale metabolomics experiments.
metabolomics mass-spectrometry lc-ms qt c-plus-plus lc-msms
Language:C++ 85
xieguigang / mzkit
Data toolkits for processing NMR, MALDI MSI, MALDI single cell, Raman Spectroscopy, LC-MS and GC-MS raw data, chemoinformatics data analysis and data visualization.
visualbasic metadna lc-ms gc-ms kegg metabolomics r-sharp ms-imaging gcxgc maldi chemoinformatics single-cell single-cell-metabolism mass-spectrometry mzkit raman-spectroscopy ms-dial lipidomics
Language:Visual Basic .NET 46
AutoFlowResearch / SmartPeak
Fast and Accurate CE-, GC- and LC-MS(/MS) Data Processing
mass-spectrometry ms-data analyses biotechnology lc-ms lc-msms gc-ms bioinformatics biotech
Language:C++ 39
batmass
chhh / batmass
Mass spectrometry data visualization
mass-spectrometry lc-ms visualization viewer mzml mzxml pepxml
Language:Java 35
rformassspectrometry / metaRbolomics-book
The MetaRbolomics book. A review of R packages in BioC, CRAN, gitlab and github.
r metabolomics multivariate-statistics lc-ms lc-msms nmr nmr-spectroscopy nmr-data lcms metabonomics rstats
Language:TeX 32
MolecularCartography / Optimus
Workflow for LC-MS feature analysis and spatial mapping
workflow lc-ms knime metabolomics mass-spectrometry sqlite3 python27
Language:Python 19
computational-metabolomics / beamspy
BEAMSpy - Birmingham mEtabolite Annotation for Mass Spectrometry (Python Package)
metabolomics metabolite-identification mass-spectrometry lc-ms dims
Language:Python 15
computational-metabolomics / msPurity
R-package - Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics
metabolomics mass-spectrometry precursor-ion-purity lc-ms dims lc-msms fragmentation bioconductor-package
Language:HTML 15
chhh / MSFTBX
MS File ToolBox - tools for parsing some mass-spectrometry related file formats (mzML, mzXML, pep.xml, prot.xml, etc.)
mass-spectrometry mzml mzxml pepxml protxml mzidentml lc-ms
Language:Java 11
zmzhang / pymass
Package for analyzing MS with Python
mass-spectrometry lc-ms gc-ms chemometrics metabolomics
Language:C 11
workflow4metabolomics / workflow4metabolomics
Workflow4Metabolomics meta repository
metabolomics workflow4metabolomics galaxy-project lc-ms nmr usegalaxy
Language:HTML 10
novak-jiri / cyclobranch
A tool for mass spectrometry data analysis.
mass-spectrometry mass-spectrometry-imaging bioinformatics bioinformatics-tool peptides peptide-identification mzml imzml ms-data lc-ms maldi-msi desi-msi image-fusion imaging metabolomics dereplication de-novo
Language:C++ 9
computational-metabolomics / metabolomicsWorkbenchR
R/Bioconductor Package - Interface to the Metabolomics Workbench RESTful API
r-package bioconductor-package metabolomics metabolomics-data lc-ms nmr-spectroscopy
Language:R 8
computational-metabolomics / structToolbox
R/Bioconductor package - STRUCT (STatistics in R Using Class Templates) Toolbox
metabolomics statistics multivariate-analysis univariate lc-ms dims bioconductor-package r-package machine-learning
Language:R 8
stanstrup / QC4Metabolomics
QC systems for metabolomics studies
lc-ms metabolomics metabolomics-studies preprocessing qc-systems xcms
Language:R 8
MSj.jl
ajgiuliani / MSj.jl
A mass spectrometry package for Julia
julia-package mass-spectrometry chromatography mzxml lc-ms julia msj spectroscopy spectrometry
Language:Julia 7
SysMedOs / lipidhunter
LipidHunter is capable to perform bottom up identification of lipids from LC-MS/MS and shotgun lipidomics data by resembling a workflow of manual spectra annotation. LipidHunter generates interactive HTML output with its unique six-panel-image, which provides an easy way to review, store, and share the identification results.
lipidomics mass-spectrometry lipids lc-ms lc-msms shotgun knime
Language:Python 7
jbellamycarter / pepfoot
PepFoot: a user friendly GUI for protein footprinting analysis
python gui-application mass-spectrometry data-visualization data-analysis protein-protein-interaction protein-ligand-interactions footprinting lc-ms mz5
Language:Python 6
LizzyParkerPannell / Untargeted_metabolomics_workflow
Collaborative workflow for untargeted metabolomics data processing and analysis using open-source tools. https://doi.org/10.3390/metabo13040463
lc-ms maldi-tof-ms mass-spectrometry metaboanalyst untargeted-metabolomics xcms maldiquant proteowizard
Language:R 6
computational-metabolomics / struct
R/Bioconductor package - STRUCT: STatistics in R Using Class Templates
metabolomics statistics multivariate-analysis univariate lc-ms dims bioconductor-package r-package machine-learning
Language:R 5
hcji / AutoMS
Deep Denoising Autoencoder-assisted Continuous Scoring of Peak Quality in High-Resolution LC−MS Data
lc-ms machine-learning metabolomics
Language:Jupyter Notebook 5
jorainer / xcmsTutorials
Tutorials and workshops describing LC-MS(/MS) data pre-processing and analysis using the xcms Bioconductor package
lc-ms metabolomics
Language:TeX 5
mjr129 / metaboclust
█ 𝐓𝐇𝐈𝐒 𝐈𝐒 𝐀 𝐌𝐈𝐑𝐑𝐎𝐑 𝐎𝐅 𝐓𝐇𝐄 𝐒𝐀𝐌𝐄 𝐑𝐄𝐏𝐎𝐒𝐈𝐓𝐎𝐑𝐘 𝐎𝐍 𝐁𝐈𝐓𝐁𝐔𝐂𝐊𝐄𝐓 – 𝐓𝐇𝐈𝐒 𝐏𝐀𝐆𝐄 𝐈𝐒 𝐍𝐎𝐓 𝐌𝐎𝐍𝐈𝐓𝐎𝐑𝐄𝐃 – 𝐏𝐋𝐄𝐀𝐒𝐄 𝐒𝐄𝐄 𝐓𝐇𝐄 𝐁𝐈𝐓𝐁𝐔𝐂𝐊𝐄𝐓 𝐏𝐀𝐆𝐄 𝐅𝐎𝐑 𝐓𝐇𝐄 𝐋𝐀𝐓𝐄𝐒𝐓 𝐃𝐄𝐓𝐀𝐈𝐋𝐒
bioinformatics biological-data-analysis time-series metabolomics pathway-analysis lc-ms gc-ms mass-spectrometry chromatography gui visualization clustering
Language:C# 4
MolecularCartography / OptimusViewer
An app for visualizing LC-MS features detected with Optimus workflow
lc-ms data-visualization qt5 amcharts mass-spectrometry sqlite3 cplusplus-11 javascript
Language:JavaScript 4
YogiOnBioinformatics / Computational-Drug-Discovery-Internship-at-Merck
Description of work done at Merck pharmaceutical company in the summer of 2018 as a Computational Drug Discovery Intern at West Point, PA. Information excludes all proprietary information belonging to Merck & Co.
python lc-ms proteomics computational-proteomics swissprot pharmaceuticals pharmacokinetics pharmacodynamics research drug-discovery drug-targets computer-science scalable-data-analysis high-performance xml labkey drug-development numpy tkinter-python publication
Language:Python 3
alexandrovteam / MassFuser
lc-ms mass-spectrometry knime python2 pandas
2
computational-metabolomics / beamspy-galaxy
Galaxy tools for BEAMSpy: Birmingham mEtabolite Annotation for Mass SpectroMetry (Python Package)
metabolomics metabolites metabolite-identification databases lc-ms dims
Language:Python 2
computational-metabolomics / mspurity-galaxy
Galaxy tools for msPurity package: includes precursor ion purity calculations and spectral matching
galaxy lc-ms dims precursor-ion-purity metabolomics mass-spectrometry fragmentation
Language:R 2
computational-metabolomics / pmp
R/Bioconductor package - Peak Matrix Processing and signal batch correction for metabolomics data sets
metabolomics data-processing mass-spectrometry normalisation scaling statistics lc-ms dims qcrsc bioconductor-package r-package
Language:R 2
ethanbass / mzinspectr
Load and analyze MS-DIAL alignment files in R for analysis of mass spectrometry data.
gc-ms metabolomics r-package lc-ms cheminformatics r r-stats
Language:R 2
YonghuiDong / Miso
R package for Multi-isotope Labeling for Metabolomics Analysis
metabolomics lc-ms isotope-labeling-experiments isotopologue
Language:R 2
CNIC-Proteomics / TurboPutative
Application for the handling and simplification of putative annotations in untargeted metabolomics analysis based on LC/ESI-MS
metabolomics bioinformatics lc-ms-data lc-ms metabolite-identification
Language:Python 1
HighResMS
JoseRaulBS / HighResMS
High Resolution Software for Mass Spectrometry
highresolution hrms mass-spectrometry chemistry gc-ms lc-ms molar-masses python scientific-calculator untargeted-metabolomics molecular-mass python3
Language:Python 1
margotbligh / Dulce
R package for annotation of glycans in MS1 and MS2 data
glycobiology r mass-spectrometry lc-ms lc-msms
Language:R 1
sajfb / Isotopic-Profile-Deconvolution-Chromatogram-IPDC-algorithm
The IPDC algorithm was developed to screen for a wide variety of organic compounds in high-resolution mass spectrometry (HRMS) data acquired from instruments with resolution power as low as 22 000 fwhm.
environmental-monitoring isotopic-distribution-calculations gc-ms lc-ms mass-spectrometry apgc environmental-toxicology
Language:MATLAB 1
SLINGhub / StratiRandom
R script and Shiny app to perform stratified randomisation
batch-effects cohort-studies lc-ms randomization
Language:R 1

lc-ms

ElucidataInc / ElMaven

xieguigang / mzkit

AutoFlowResearch / SmartPeak

chhh / batmass

rformassspectrometry / metaRbolomics-book

MolecularCartography / Optimus

computational-metabolomics / beamspy

computational-metabolomics / msPurity

chhh / MSFTBX

zmzhang / pymass

workflow4metabolomics / workflow4metabolomics

novak-jiri / cyclobranch

computational-metabolomics / metabolomicsWorkbenchR

computational-metabolomics / structToolbox

stanstrup / QC4Metabolomics

ajgiuliani / MSj.jl

SysMedOs / lipidhunter

jbellamycarter / pepfoot

LizzyParkerPannell / Untargeted_metabolomics_workflow

computational-metabolomics / struct

hcji / AutoMS

jorainer / xcmsTutorials

mjr129 / metaboclust

MolecularCartography / OptimusViewer

YogiOnBioinformatics / Computational-Drug-Discovery-Internship-at-Merck

alexandrovteam / MassFuser

computational-metabolomics / beamspy-galaxy

computational-metabolomics / mspurity-galaxy

computational-metabolomics / pmp

ethanbass / mzinspectr

YonghuiDong / Miso

CNIC-Proteomics / TurboPutative

JoseRaulBS / HighResMS

margotbligh / Dulce

sajfb / Isotopic-Profile-Deconvolution-Chromatogram-IPDC-algorithm

SLINGhub / StratiRandom