lipidomics

There are 0 repository under lipidomics topic.

• xieguigang / mzkit

  Data toolkits for processing NMR, MALDI MSI, MALDI single cell, Raman Spectroscopy, LC-MS and GC-MS raw data, chemoinformatics data analysis and data visualization.

  visualbasicmetadnalc-msgc-mskeggmetabolomicsr-sharpms-imaginggcxgcmaldichemoinformaticssingle-cellsingle-cell-metabolismmass-spectrometrymzkitraman-spectroscopyms-diallipidomics
  Language:Visual Basic .NET 46

• pyQms / pyqms

  pyQms, generalized, fast and accurate mass spectrometry data quantification

  mass-spectrometryproteomicsmetabolomicslipidomicscomputational-biologyms-data
  Language:Python 28

• ahmohamed / lipidr

  Data Mining and Analysis of Lipidomics datasets in R

  bioconductorrlipidomics
  Language:R 25

• wenbostar / metaX

  metaX: a flexible and comprehensive software for processing omics data.

  metabolomicsmsmsquality-controllipidomicsmetaxpipelinemass-spectrometrymachine-learning
  Language:R 20
• maven

  eugenemel / maven

  Maven GUI: Metabolomics Analysis and Visualization Engine

  metabolomicsmass-spectrometrybionformaticslipidomicsisotope-labeling-experiments
  Language:C++ 18
• IDSL.IPA

  idslme / IDSL.IPA

  Intrinsic Peak Analysis (IPA) pipeline for peak-picking in large-scale untargeted small molecule analysis including metabolomics, lipidomics, exposomics, and environmental studies.

  cranexposomefeature-detectionlipidomicsmass-spectrometrymetabolomicspeak-detectionpeak-pickingrsmall-moleculeuntargeted-metabolomics
  Language:R 14

• saezlab / lipyd

  Python module for lipidomics LC MS/MS data analysis

  lc-msmslipidomicsopenmspython
  Language:Python 14

• idslme / IDSL_MINT

  A Deep Learning Framework to Interpret Raw Mass Spectrometry (m/z) Data

  cheminformaticslipidomicsmass-spectrometrymetabolomicsmolecular-fingerprintsmsmspython3pytorchrdkitsmall-moleculetransformeruntargeted-metabolomics
  Language:Python 12
• LipidLynxX

  SysMedOs / LipidLynxX

  LipidLynxX provides the possibility to convert, cross-match, and link various lipid annotations to the tools supporting lipid ontology, pathway, and network analysis aiming systems-wide integration and functional annotation of lipidome dynamics in health and disease.

  lipidomicslipidnomenclature
  Language:Python 12

• lifs-tools / awesome-lipidomics

  A collection of awesome lipidomics tools and resources

  awesomeawesome-listlipidomicsbioinformaticsdatabaserepository
  11

• respiratory-immunology-lab / metabolome-lipidome-MSDIAL

  Guide to processing raw LCMS metabolomic and lipidomic data using MS-DIAL, followed by data pre-processing and secondary annotation (of metabolites) in R.

  metabolomicslipidomicsms-dial
  Language:R 11

• lifs-tools / goslin

  Goslin is the Grammar on succinct lipid nomenclature.

  parsingnomenclaturegrammarmetabolomicsmass-spectrometrylipidlipidomics
  Language:ANTLR 10

• vanmooylipidomics / LOBSTAHS

  Git repository for the R package "LOBSTAHS" (Lipid and Oxylipin Biomarker Screening Through Adduct Hierarchy Sequences)

  lipidlipidomicsplanktonalgaeadducthplc-esi-msmass-spectrometryoxidative-stress-biomarkersoxylipinsoxidized-lipidsbioconductor
  Language:R 8
• IDSL.UFA

  idslme / IDSL.UFA

  United Formula Annotation (UFA) for LC-HRMS data

  cranexposomeisotopic-distribution-calculationslipidomicsmass-spectrometrymetabolomicsmolecular-formulae-assignmentsmall-molecule
  Language:R 7

• SysMedOs / lipidhunter

  LipidHunter is capable to perform bottom up identification of lipids from LC-MS/MS and shotgun lipidomics data by resembling a workflow of manual spectra annotation. LipidHunter generates interactive HTML output with its unique six-panel-image, which provides an easy way to review, store, and share the identification results.

  lipidomicsmass-spectrometrylipidslc-mslc-msmsshotgunknime
  Language:Python 7

• barupal / ADNI

  Alzheimer's Disease Neuroimaging Initiative: Untargeted Lipidomics Analysis

  alzheimers-diseaseadnilipidomicslcmsmass-spectrometrymetabolomics
  Language:R 6

• EuBIC / ReproducibleMSGuidelines

  This project aims at defining a set of guidelines for reproducible mass spectrometry-based experiments.

  mass-spectrometryproteogenomicsproteomicsmetabolomicslipidomicsguidelinesopenaccess
  Language:JavaScript 6

• BioinfOMICS / LipidSigR

  R package for Profiling and Differential expression Analysis of Lipidomic Datasets

  lipidomics
  Language:R 5

• idslme / IDSL.MXP

  A light weight and fast parser for reading mzML, mzXML and netCDF data files

  exposomegc-ms-datalc-ms-datalipidomicsmass-spectrometrymetabolomicsmzmlmzxmlnetcdfr
  Language:R 5

• computational-metabolomics / dimspy-galaxy

  Galaxy tools for Python package DIMSpy: data processing of Direct-Infusion Mass Spectrometry-based metabolomics and lipidomics data

  metabolomicsgalaxygalaxy-toolmass-spectrometrydimslipidomics
  4

• lifs-tools / jgoslin

  Java implementation of the latest shorthand nomenclature.

  parsingnomenclaturegrammarmetabolomicsmass-spectrometrylipidlipidomics
  Language:Java 4

• SLINGhub / LICAR

  Functions and a Shiny app to correct class-based separation LC-MRM-MS lipidomics data for isotopic interferences

  massspectrometrylipidomicsisotope-correctionrshiny
  Language:R 4

• SysBioChalmers / SLIMEr

  Collection of scripts for improving lipid constraints in yeast-GEM

  lipidomicsyeastdata-integrationsystems-biology
  Language:MATLAB 4

• lifs-tools / pygoslin

  Python implementation of parsers for the Grammars on succinct lipid nomenclature (Goslin).

  parsingnomenclaturegrammarmetabolomicsmass-spectrometrylipidlipidomics
  Language:Python 3

• lifs-tools / rmzTab-m

  The R-language bindings for mzTab-M

  mztabmetabolomicsdata-formatvalidationlipidomicsmass-spectrometry
  Language:R 3

• RayLabIIITD / pyLFDA

  pyLFDA is a tool which allows analysis of pairwise lipid force distribution along with other functions such as curvature and diffusion.

  lipidomicspythonmdanalysisanalysis-package
  Language:Jupyter Notebook 3

• ricoderks / lipidomics

  A shiny app for my lipidomics workflow.

  lipidomics
  Language:R 3

• ShinyFabio / ADViSELipidomics

  ADViSELipidomics is a novel Shiny app for the preprocessing, analysis, and visualization of lipidomics data.

  shiny-appsshinylipidomicslipidslipidsearchliquid
  Language:R 3

• syjgino / SLA

  A DMS Shotgun Lipidomics Workflow Application to Facilitate High-Throughput, Comprehensive Lipidomics

  lipidomics
  Language:Python 3

• Chika-Ugwuodo / MultiOmics

  This repository contains codes I wrote mostly in R to perform various kinds of analysis of multi-omics datasets.

  bioinformaticslipidomicsmetabolomicsomicsproteomics
  Language:R 2

• Harel-lab / APRT-sex-differences

  rnaseqkillifishagingrnaeditingmetabolomicslipidomics
  Language:Jupyter Notebook 2

• SLINGhub / iSLS10

  iSLS10 data analysis workshop

  lipidomicsrdataanalysisisls10workshop
  Language:R 2

• eagomezc / Machine-Learning-and-RA-treatment

  This repository contains the script used to study blood pro-resolving mediators as biomarkers to predict the response of DMARD treatment in rheumatoid arthritis patients

  lipidomicsmachine-learningphd-thesisresolution
  Language:R 1

• InnovativeOmics / Core-Match

  Core scripts for FluoroMatch, LipidMatch, and PolyMatch

  chromatographyhighlipidomicsliquidmassntapfaspolymersresolutionspectrometrypegs
  Language:R 1

• IPHYS-Bioinformatics / LORA

  LORA: Lipid Over-Representation Analysis

  enrichmentenrichment-analysislipidomicslipids
  Language:Python 1

• SLINGhub / iSLS11

  Scripts and notes used in the iSLS11 workshop on data analysis

  analysisdatalipidomicsmassprocessingrspectrometrybiological-variability
  Language:HTML 1