maxquant

There are 3 repositories under maxquant topic.

• MannLabs / alphapeptstats

  Python Package for the downstream analysis of mass-spectrometry-based proteomics data

  alphapept-ecosystemdia-nnfragpipemass-spectrometrymaxquantmsfraggerproteomicsspectronaut
  Language:Jupyter Notebook 56

• cbielow / PTXQC

  A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant

  drag-and-drophacktoberfestheatmapmatch-between-runsmaxquantmetricmztabopenmsproteomicsquality-controlquality-metricsreport
  Language:HTML 42

• tbaccata / amica

  amica: an interactive and user-friendly web-based platform for the analysis of proteomics data

  fragpipemaxquantproteomicsproteomics-data-analysisshiny-r
  Language:R 23

• cox-labs / PerseusR

  R package for easy interop between Perseus and R

  perseusmaxquantbioinformaticsrinteropproteomics
  Language:R 12

• siheming / mspypeline

  Package to analyze Mass Spec Data

  mass-spectrometrymaxquant
  Language:Python 11

• cox-labs / perseuspy

  Integration between Perseus and Python

  perseuspythonmaxquantbioinformatics
  Language:Python 9

• cox-labs / PluginInterop

  Enables working with external scripts and tools from within Perseus

  perseusrpythoninteropbioinformaticsproteomicsmaxquant
  Language:C# 4

• SamueldelaCamaraFuentes / Downstreaming-analysis-workflow

  Pipeline and shiny app for the downstreaming analysis of quantitative proteomic data

  dia-nnmaxquantmsfraggermass-spectrometryproteomicsproteomics-data-analysis
  Language:R 2

• SamueldelaCamaraFuentes / TraianProt

  Pipeline and shiny app for the downstreaming analysis of quantitative proteomic data

  dia-nnmass-spectrometrymaxquantmsfraggerproteome-discovererproteomicsproteomics-data-analysis
  Language:R 2

• protViz / SRMService

  Provides reports for quantitative mass spectrometry data.

  mass-spectrometryquantitative-dataproteomicsmaxquantreproducible-research
  Language:R 1

• pwilmart / MaxQuant_and_PAW

  Compares PAW and MQ for a 7-channel TMT experiment; compares edgeR to two-sample t-test

  cometjupyter-notebookmaxquantpaw-pipelineproteomicsrtmttmt-data-analysis
  Language:HTML 1

• pwilmart / Multiple_TMT_MQ

  Developing mouse lens done with MQ

  irs-normalizationjupyter-notebookmaxquantproteomicsrtmttmt-data-analysis
  Language:HTML 1

• BerndHessling / MaxQuant-Incorporation-Control

  R-script to check incorporation level of heavy SILAC amino acids

  maxquantmaxquant-incorporation-controlprotemicssilac
  Language:R 0

• BerndHessling / MQ-Queue

  Queue MaxQuant analysis by saving MaxQuant parameter files in a watch folder.

  maxquantqueue-maxquant-analysis
  Language:R 0

• BerndHessling / ShinyQC

  Automated Proteomics quality control package

  maxquantproteomicsrshiny
  0

• devradiumking / maxabpp

  R package that visualizes MaxQuant output of activity-based protein profiling experiments.

  maxquantvolcano-plotactivity-based-protein-profilingchemoproteomicsproteomicsproteomics-data-analysisbioinformaticslabel-free-quantificationvenn-diagramprotein-group-comparisontarget-diagramtiered-intersections
  Language:R 0

• RasmussenLab / hela_qc_mnt_data

  Functionality for processing and analysing HeLa data quality control (QC) and maintenance (MNT) samples processed by MaxQuant

  hela-cellsmaxquant
  Language:Jupyter Notebook 0

• LabKey / MaxQuant

  LabKey Server module for importing MaxQuant results, originated from the Ong lab at UW

  labkey-modulemaxquant
  Language:Java