Steffen Neumann (sneumann)

sneumann

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Organizations
CDK-R
HUPO-PSI
ipb-halle
MassBank
MetClassNet
NFDI4Chem
nmrML
phnmnl

Steffen Neumann's repositories

xcms

This is the git repository matching the Bioconductor package xcms: LC/MS and GC/MS Data Analysis

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mzR

This is the git repository matching the Bioconductor package mzR: parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data)

CAMERA

This is the git repository matching the Bioconductor package CAMERA: Collection of annotation related methods for mass spectrometry data

Rdisop

This is the git repository matching the Bioconductor package Rdisop: Decomposition of Isotopic Patterns

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weizfrag

Test-ground to integrate WeizMass into MetFrag

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convertmzmlwrapper

This repo contains some local convenience scripts around mzML converision tools

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bioschemas-validator

This is the validation suite targeting metadata conforming to Bioschemas profiles.

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bioschemas.github.io

Files for the Bioschemas website.

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container

Options for running ProteoWizard applications via containers (e.g. Docker)

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d2l-en

Interactive deep learning book with multi-framework code, math, and discussions. Adopted at 400 universities from 60 countries including Stanford, MIT, Harvard, and Cambridge.

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FAIR-checker

Web tool to assess FAIR principles and promote their implementation

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IonMobilityViz

LC-IM-MS data visualization tool in R / Shiny

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javatools

Java programs for the NMReDATA format

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MassSpecWavelet

MassSpecWavelet Bioconductor package

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metabolighteR

R Interface to the Metabolights REST API

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metabolights-editor

MetaboLights Online Editor (MOE) is a Single Page Application (SPA) built upon Angular 7, and Redux frameworks. MOE provides MetaboLights users and curators with an intuitive and easy to use interface to create, edit and annotate their studies online.

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metabolomics2023

Contribution to the Metabolomics 2023 conference of the Metabolomics Society

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metfragrank

Process MetFrag parameter files and calculate rank summary

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OntoMaton

OntoMaton facilitates ontology search and tagging functionalities within Google Spreadsheets.

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opentims

Open-source C++ and Python module for opening binary timsTOF data files.

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plantspec

A tool for spectral analysis of plant stoichiometry

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PXD019330

ISA-Tab annotation of PRIDE submission PXD019330

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rmzTab-m

The R-language bindings for mzTab-M

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schemas-science.github.io

Webpages for schemas.science which provides specifications (types and profiles) for research digital objects

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ShinyMzMLConvert

A GUI for different mzML converter tools

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specifications

Issue tracker, technical wiki, and example markup

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spectra-hash

The splash, this is the reference documentation

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