variant-call-format

There are 0 repository under variant-call-format topic.

• labsquare / cutevariant

  A standalone and free application to explore genetics variations from VCF file

  geneticsvariant-call-formatvcfguipyside2python3
  Language:Python 89

• iqbal-lab-org / ivcfmerge

  A utility to merge a large number of VCF files incrementally

  vcf-filesvariant-call-formatvcfvcfs
  Language:Python 3

• tsnorri / libbio

  Classes and functions for use with bioinformatics.

  bioinformaticslibraryvariant-call-format
  Language:C++ 3

• japeto / vcf2xls

  Your VCF converted to XLS from now. VCF stands for Variant Call Format and it is used by bioinformatics projects to encode structural genetic variants.

  bioinformaticsvcf-convertervariant-call-format
  Language:JavaScript 1

• Matthew-Mosior / Basic-Variant-Parser

  A Haskell script that performs basic parsing on the default output of ensembl-vep and variant-calling format (vcf) files.

  haskellparsingensembl-vepcomposableunix-toolvariant-effect-predictionvariant-call-formatvcf-converter
  Language:Haskell 1

• pmadanecki / htdp

  High-throughput Tabular Data Processor (HTDP)

  geneticsngsmicroarraycghvcfvcf-converterconverterjavabioinformatics-analysisbioinformaticsvariant-call-formatdata-analysisnext-generation-sequencingvcf-filteringvcf-filesvcf-datavcf-comparisoncomparative-genomic-hybridizationfiltering
  1

• anand-imcm / get-variant-info

  A WDL-based workflow for extraction of variants and their associated info from large VCF files

  variant-call-formatvariant-callingvariant-filtrationvcfvcf-filtering
  Language:Python 0

• maurya-anand / liftover

  Convert genomic coordinates from the Human Genome version 19 (hg19) to version 38 (hg38)

  bcftoolsgenomicsliftovervariant-call-formatvariant-calling
  Language:Python 0

• Sayitobar / XLSX2VCF

  Converts XLSX documents into VCF (Variant Call Format) - remastered for JDK1.8 2023

  bioinformaticsvariant-call-formatvcf-converter
  Language:Java 0

• bdolmo / vcf2json

  Convert an standard VCF to JSON format

  vcf-convertervcf-formatjsonvariant-call-format
  Language:Python

• Matthew-Mosior / Basic-Variant-Selector

  A Haskell script for selecting variants from a variant calling format (vcf) file based on variants present in a mgibed file.

  haskellsomatic-variantsmanual-reviewvariant-call-formatbioinformatics-scripts
  Language:Haskell

• NCI-CGR / HPV_low_VAF_SNV_prediction

  Predicting true low-VAF SNVs in HPV using triplicate NGS samples and machine learning

  hpvmachine-learningngs-analysissingle-nucleotide-variationion-torrentextreme-gradient-boostingintrahostcancer-genomicsintrahost-genetic-diversitysnvvariant-call-formatvariant-callingvcfvcf-fileshuman-papillomavirusisnvvcfgenie
  Language:Jupyter Notebook

• sghignone / samtools

  SAMtools and BCFtools (v1.10) for manipulating next-generation sequencing data, from bioconda

  dockersequence-manipulationbambam-filessamsam-filesminiconda3biocondavariant-call-formatvcfvcf-files
  Language:Dockerfile

• tmsincomb / DeepVCF

  Variant Calling with Deep Learning for Prokaryotic genomes using TensorFlow. Adds (0 <= P(Variant) <= 1) to VCF files under INFO as abbreviated "ACC=".

  deeplearningprokaryotesprokaryotic-genomesvariant-callingvariant-call-formatvcfdeep-learning
  Language:Jupyter Notebook