cbrueffer

snakemake-aws-parallelcluster-slurm

Snakemake profile for running on AWS ParallelCluster with the Slurm scheduler

MutationExplorer

R Shiny based lightweight mutation exploration tool

cbrueffer.github.io

Personal website.

phd_thesis

LaTeX sources for my PhD thesis RNA Sequencing for Molecular Diagnostics in Breast Cancer at the Lund University Faculty of Medicine (published December 2020).

bedtools2

A powerful toolset for genome arithmetic.

bioconda-utils

Utilities for building and managing bioconda recipes

biopython

Fork of the official biopython repository.

bowtie2

A fast and sensitive gapped read aligner

cbrueffer

cbrueffer Github README

checkQC

CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria

circlize

Circular visualization in R

Complete-Striped-Smith-Waterman-Library

conda-forge-pinning-feedstock

A conda-smithy repository for conda-forge-pinning.

conda_r_skeleton_helper

Cleaning up Conda r-packages

core

OPNsense GUI, API and systems backend

covid19-review

A collaborative review of the emerging literature on diagnostics and treatments related to COVID-19

docs

OPNsense documentation

dotfiles

Dot files

fitter

Fit data to many distributions

leviosam2

Fast and accurate coordinate conversion between assemblies

plugins

OPNsense plugin collection

r-feedstock

A conda-smithy repository for r.

seqPanther

Variant Caller and Patcher

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

survminer

Survival Analysis and Visualization

tidyomicsBlog

the manifesto, workshops and tutorials of the tidy transcriptomics

tidySummarizedExperiment

Brings SummarizedExperiment to tidiverse with no side-effects

tnverify

wowchemy-hugo-themes

📝 The website builder for Hugo. Build and deploy a beautiful website in minutes!