Xiaotao Wang's repositories
NeoLoopFinder
A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes
HiC_pipeline
An easy-to-use Hi-C data processing software supporting distributed computation.
StripeCaller
A toolkit for analyzing architectural stripes
Best-Labs-of-3D-Genome
Data and the co-authored network I extracted for lab selection in 3D genome research field
domaincaller
A Python implementation of the original DI domain caller
Project-Euler
Python solutions for Project Euler
Think-Complexity-Notes
Jupyter notebooks I created during reading Allen Downey's book Think Complexity
4DN-joint-analysis
Scripts and data used to generate figures for the 4DN joint analysis flagship paper
awesome-public-datasets
A topic-centric list of high-quality open datasets in public domains. Propose NEW data ☛☛☛PR☛☛☛
bioconda-recipes
Conda recipes for the bioconda channel.
cs-video-courses
List of Computer Science courses with video lectures.
free-programming-books
:books: Freely available programming books
gimmemotifs
Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed installation instructions and usage examples.
imbalanced-learn
Python module to perform under sampling and over sampling with various techniques.
pomegranate
Fast, flexible and easy to use probabilistic modelling in Python.
pyensembl
Python interface to ensembl reference genome metadata (exons, transcripts, etc...)
Valentine-gift
For my girlfriend