untargeted-metabolomics

There are 2 repositories under untargeted-metabolomics topic.

• computational-metabolomics / dimspy

  Python package for processing direct-infusion mass spectrometry-based metabolomics and lipidomics data

  metabolomicsmass-spectrometrydimsuntargeted-metabolomicsrawmzml
  Language:Python 18
• IDSL.IPA

  idslme / IDSL.IPA

  Intrinsic Peak Analysis (IPA) pipeline for peak-picking in large-scale untargeted small molecule analysis including metabolomics, lipidomics, exposomics, and environmental studies.

  metabolomicslipidomicsexposomemass-spectrometryfeature-detectionpeak-detectionsmall-moleculecranruntargeted-metabolomicspeak-picking
  Language:R 14

• idslme / IDSL_MINT

  A Deep Learning Framework to Interpret Raw Mass Spectrometry (m/z) Data

  lipidomicsmass-spectrometrymetabolomicsmolecular-fingerprintsmsmssmall-moleculetransformeruntargeted-metabolomicspython3pytorchcheminformaticsrdkit
  Language:Python 13

• jcapelladesto / geoRge

  geoRge: a computational tool for stable isotope labelling detection in LC/MS-based untargeted metabolomics

  untargeted-metabolomicsmetabolomics13c
  Language:R 9

• LizzyParkerPannell / Untargeted_metabolomics_workflow

  Collaborative workflow for untargeted metabolomics data processing and analysis using open-source tools. https://doi.org/10.3390/metabo13040463

  lc-msmaldi-tof-msmass-spectrometrymetaboanalystuntargeted-metabolomicsxcmsmaldiquantproteowizard
  Language:R 6

• Yaser218 / Untargeted-Metabolomics-Clustering

  VOCCluster: Untargeted Metabolomics Feature Clustering Approach for Clinical Breath Gas Chromatography - Mass Spectrometry Data

  gcmsuntargeted-metabolomicsclustering
  Language:Python 5

• mbongaerts / Metchalizer

  metabolomicsbatch-effectsnormalizationuntargeted-metabolomicsage-gender-estimation
  Language:Jupyter Notebook 2

• UMCUGenetics / dIEM

  For untargeted metabolomics, this tool calculates probability scores for metabolic disorders. In addition, it provides visual support with violin plots of the mass spectrometry (DI-HRMS) measurements for the lab specialists.

  untargeted-metabolomics
  Language:R 2

• Christ14n97 / MSc_Untarg_Metabo_Workflow

  My MSc thesis focused on the improvement of metabolite biomarkers annotation. The resulting workflow combined common unsupervised-supervised ML models with graph-based analysis of metabolic reconstructions.

  chemometricshigh-level-programmingmachine-learningmaster-thesisuntargeted-metabolomicsmetabolite-annotation
  1
• HighResMS

  JoseRaulBS / HighResMS

  High Resolution Software for Mass Spectrometry

  highresolutionhrmsmass-spectrometrychemistrygc-mslc-msmolar-massespythonscientific-calculatoruntargeted-metabolomicsmolecular-masspython3
  Language:Python 1

• CeMOS-Mannheim / M2ara

  M²ara, a R shiny web app for feature selection in cell-based assays.

  cell-based-assayconcentration-response-analysismaldi-tof-msuntargeted-metabolomics
  Language:HTML

• CNIC-Proteomics / TurboPutative-web

  metabolomicslc-msuntargeted-metabolomicsdata-processing
  Language:HTML

• Ramtin92 / PUMA

  Pathway Activity Analysis and Metabolite Annotation for Untargeted Metabolomics using Probabilistic Modeling

  machine-learninginferneceuntargeted-metabolomicsbiological-networksmetabolic-models
  Language:Python