metabolite-identification

There are 1 repository under metabolite-identification topic.

RogerGinBer / RHermes
RHermes is a semi-targeted metabolomics package to deeply characterize biological and environmental samples.
r metabolomics gui metabolite-identification
Language:R 25
computational-metabolomics / beamspy
BEAMSpy - Birmingham mEtabolite Annotation for Mass Spectrometry (Python Package)
metabolomics metabolite-identification mass-spectrometry lc-ms dims
Language:Python 15
GRONINGEN-MICROBIOME-CENTRE / MicrobeRX
MicrobeRX
cheminformatics computational-biology drug-design enzymes gut-microbiome metabolic-models metabolite metabolite-identification metabolite-prediction microbiome
Language:Python 8
aalto-ics-kepaco / msms_rt_score_integration
Code, Data and Results of the publication: "Probabilistic Framework for Integration of Tandem-Mass Spectrum and Retention Time Information in Small Molecule Identification" by Bach et al. 2020
lc-msms mass-spectrum metabolite-identification retention-order-prediction
Language:MAXScript 7
Wishartlab-openscience / Biotransformer
A computational tool for the prediction and identification of metabolites.
metabolism machine-learning qsar expert-systems cheminformatics environmental-science exposure metabolomics metabolites metabolite-identification metabolite-prediction environmental microbial human gut-microbiome java
Language:Java 6
computational-metabolomics / metfrag-galaxy
Metfrag for Galaxy
metabolomics galaxy metabolites metabolite-identification annotation fragmentation ms2
Language:HTML 3
michaelwitting / metabolomicsUtils
This repository contains several utility functions for MS based metabolomics
metabolomics mass-spectrometry metabolite-identification
Language:R 3
Metapolish
AndreHolzer / Metapolish
Metabolite Peak List Merge, Annotation & Polishing Tool: A user friendly, platform independent R tool to merge, annotate and polish metabolite-peak list data from LC-/GCMS runs
analysis data-analysis gcms metaboanalyst metabolite-identification metabolomics pdf-converter peak-analysis r r-scripts shimadzu-gcsolution thermo-xcalibur-tracefinder tool
Language:R 2
computational-metabolomics / beamspy-galaxy
Galaxy tools for BEAMSpy: Birmingham mEtabolite Annotation for Mass SpectroMetry (Python Package)
metabolomics metabolites metabolite-identification databases lc-ms dims
Language:Python 2
BioDeep / metabolomics-report-standards
Metabolomics Feature Identification Report Industry Standards from BioNovoGene Corporation
lc-ms metabolite-identification metadna spectrum alignment
1
CNIC-Proteomics / TurboPutative
Application for the handling and simplification of putative annotations in untargeted metabolomics analysis based on LC/ESI-MS
metabolomics bioinformatics lc-ms-data lc-ms metabolite-identification
Language:Python 1
MNXref
MetaNetX / MNXref
MNXref: Reconciliation of metabolites and biochemical reactions for metabolic networks
chemoinformatics metabolites biochemical-reactions metabolite-identification reconciliation metabolic-network metabolic-models metabolic-reconstruction metabolic-pathways
1
Wishartlab-openscience / biotransformer-apis
Provide APIs to facilitate the integration of various libraries into BioTransformer.
metabolite-prediction metabolite-identification java cheminformatics metabolomics
Language:Java 1