jorainer

ensembldb

This is the ensembldb development repository.

metabolomics2018

Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.

SpectraTutorials

These workshops and tutorials provide use cases and examples for mass spectrometry data handling and analysis using the Spectra Bioconductor package.

atc

This package provides the Anatomical Therapeutical Chemical (ATC) Classification data from WHOCC and implements functions that facilitate working with these.

MetaboAnnotationTutorials

Examples and tutorials for the MetaboAnnotation, MetaboCoreUtils and CompoundDb R packages

xcmsTutorials

Tutorials and workshops describing LC-MS(/MS) data pre-processing and analysis using the xcms Bioconductor package

metabolomics2023

Contribution to the Metabolomics 2023 conference of the Metabolomics Society

AHEnsDbs

Supplies AnnotationHub with EnsDb Ensembl-based annotation databases for all species.

AHMassBank

MassBank metadata for AnnotationHub

EuroBioC2024

Contribution to the EuroBioC2024 conference

annotation_ecosystem

Supplementary material for the annotation ecosystem paper.

bioconductor.org

Source code for the Bioconductor website

BiocWorkingGroups

Bioconductor working group guidelines. Also, a list of active, suggested, and inactive working groups for bioconductor for the community to volunteer to be apart of. The community is also welcome to suggest new working groups.

chadwm

Making dwm as beautiful as possible!

CodeOfConduct

CSAMA

Lectures and workshops for the CSAMA Bioconductor workshop

CSAMA_website

Website for CSAMA

install_scripts

Some installation scripts to easily set up Mac OS system to my needs.

memacs

Make file to fetch and build emacs add-ons.

MetaboAnnotation

High level functionality to support and simplify metabolomics data annotation.

MsBackendRawFileReader

Spectra MsBackend for Thermo Fisher Scientific's New RawFileReader

MSEntropy

Spectral entropy for mass spectrometry data.

MsQuality_manuscript

mzR

This is the git repository matching the Bioconductor package mzR: parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data)

psi-ms-CV

HUPO-PSI mass spectrometry CV

pwiz

The ProteoWizard Library is a set of software libraries and tools for rapid development of mass spectrometry and proteomic data analysis software.

RaMP-DB

RMassBank

Playground for experiments on the official http://bioconductor.org/packages/devel/bioc/html/RMassBank.html

Spectra

Low level infrastructure to handle MS spectra

XCMS3_FeatureBasedMN