rformassspectrometry / metaRbolomics-book

The MetaRbolomics book. A review of R packages in BioC, CRAN, gitlab and github.

The MetaRbolomics book

Repository for the on-line metaRbolomics book at https://rformassspectrometry.github.io/metaRbolomics-book/

Including some active code that is executed upon each build.

This material, unless excplicitly otherwise stated, is CC-BY 4.0 licenced.

Docker images

There is a docker image that contains the build environment to render the book at https://hub.docker.com/repository/docker/sneumann/metarbolomics-book-base Output directory and output format are configurable via environment variables.

Also check:

https://stackoverflow.com/questions/44143110/visualizing-r-function-dependencies

https://cran.r-project.org/web/packages/miniCRAN/vignettes/miniCRAN-dependency-graph.html

https://cran.r-project.org/web/packages/pkgnet/vignettes/pkgnet-intro.html pkgnet can analyze any R package locally installed. (Run installed.packages() to see the full list of packages installed on your system.)

Building the book

The travisScript.sh uses the Docker image and builds the book in the build directory.

Simply run

./travisScript.sh

to build the book. Output will be saved in the build/public directory.