metaproteomics

There are 1 repository under metaproteomics topic.

• iquasere / KEGGCharter

  A tool for representing genomic potential and transcriptomic expression into KEGG pathways

  metabolic-pathwaysmetagenomicsmetatranscriptomicsmetaproteomicskegg-pathwaykegg-ortholog
  Language:Python 46
• MOSCA

  iquasere / MOSCA

  Meta-Omics Software for Community Analysis

  metagenomicsmetatranscriptomicsmetaproteomicscommunity-analysis
  Language:Python 33

• compomics / meta-proteome-analyzer

  MetaProteomeAnalyzer (MPA) software for analyzing and visualizing MS-based metaproteomics data.

  bioinformatics-pipelinedatabase-searchtoolmetaproteomicsprotein-identificationproteomicssoftware
  Language:TSQL 27

• unipept / unipept

  A Ruby on Rails application for proteomics data analysis

  data-analysisdata-visualizationmetaproteomicsunipeptuniprot
  Language:Vue 23

• BAMeScience / Mistle

  Mistle is a fast spectral search engine. It uses a fragment-indexing technique and SIMD intrinsics to match experimental MS2 spectra to large spectral libraries at a high performance.

  algorithmmetaproteomicsproteomicsspectral-librarytandem-ms
  Language:C++ 14

• KevinMcDonnell6 / chordomics

  Interactive visualisation and data annotation for meta-omics data

  metagenomicsmetatranscriptomicsmetaproteomicsvisualizationvisualisation
  Language:R 7

• johanneswerner / mPies

  mPies: metaProteomics in environmental sciences

  bioinformaticsmetaproteomicssnakemake
  Language:Python 6

• compomics / pout2prot

  Pout2Prot converts Percolator output files to protein group and subgroup files using Occam's razor or anti-Occam's razor. These output files can directly be used in Prophane for further downstream taxonomic and functional analysis

  proteomicsbioinformaticsmetaproteomicsprotein-inference
  Language:Python 5

• unipept / unipept-cli

  Unipept command line interface

  rubymetaproteomicsunipept
  Language:Ruby 5

• muzafferarikan / gNOMO2

  gNOMO2 allows integrated multi-omics analyses of microbiomes

  amplicon-sequencingmetagenomicsmetaproteomicsmetatranscriptomicsmicrobiomemulti-omics
  Language:Python 4

• northomics / pepFunk

  Peptide-centric functional enrichment tool

  shinyrstudiobioinformaticsmetaproteomicsmicrobiome-analysis
  Language:R 4

• Biocomputing-Research-Group / FDR

  A fast and accurate fine-grained taxonomy-specific FDR assessment tool

  metaproteomicstarget-decoy-searchtaxonomy-specific-fdr-control
  Language:Python 3

• xyz1396 / SiprosToolKits-Sipros4

  tools collection of Sipros for stable isotopic mass spectrum meta proteomic research

  isotopesiproslc-msmsmass-spectrometrymetagenomicsmetaproteomicsproteomicssipstable-isotopes
  Language:C 3

• byemaxx / MetaX

  A novel tool for linking peptide sequences with taxonomic and functional information in Metaproteomics.

  metaproteomicsotfoperational-taxa-functionspeptide-centric
  Language:Python 1

• cmkobel / mspipeline1

  🪆🦖 A snakemake wrapper around Nesvilab's FragPipe-CLI. In a perfect world, this pipeline was based on Sage.

  fragpipehpcmetaproteomicsparallel-computingproteomicssnakemake-pipeline
  Language:Python 1

• Nkts007 / Research-Project

  This repository holds the code and notes during the use of Casanovo as part of my Research Project, as well as links to resources used as part of the Metaproteomic Analysis of my samples.

  bioinformatics-analysisdenovomachine-learningmetaproteomicspeptide-prediction
  Language:Jupyter Notebook 1