noriakis

ggkegg

Analyzing and visualizing KEGG information using the grammar of graphics

CBNplot

Bayesian network plot for the enrichment analysis results

biotextgraph

R library to make a summarized visualization of textual information by network

stana

Metagenotyping analysis in R

pykegg

Analyze and visualize KEGG information using network approach

tidySummarizedExperiment

Brings SummarizedExperiment to tidiverse with no side-effects

nvbio

NVBIO is a library of reusable components designed to accelerate bioinformatics applications using CUDA.

scstruc

Gene regulatory network based on Bayesian network structure in single-cell transcriptomics

ccdrAlgorithm

Structure learning for Bayesian networks using the CCDr algorithm.

clusterlayouts

Network layouts using the cluster information

cyjs_test

testing the Cytoscape.js

edgebundle

R package implementing edge bundling algorithms

gget

🧬 gget enables efficient querying of genomic reference databases

ggsc

ggspavis

Visualization functions for spatially resolved transcriptomics data

metagenome-pipeline

Shotgun metagenomic sequences processing pipeline

MIDAS2_scripts

Scripts for MIDAS2 (Metagenomic Intra-Species Diversity Analysis System 2)

MIDAS2NV

Metagenomic Intra-Species Diversity Analysis 2 using GPU

misc

Miscellaneous data for the package

nmfbina

Non-Negative Matrix Factorization for Binary Data

piphir

Functional prediction from 16S rRNA gene sequencing data using Piphillin algorithm in R

pubmedMini

Storing PMC article information for each gene query

q2-pathway

QIIME 2 plugin for visualizing and analyzing pathway information based on gene family abundances

rigraph

igraph R package

scRepertoire

A toolkit for single-cell immune profiling

software

tidybn

Tidy manipulation of Bayesian network

tidygraph

A tidy API for graph manipulation

tidyseurat

Seurat meets tidyverse. The best of both worlds.

tidySingleCellExperiment

Brings SingleCellExperiment objects to the tidyverse