andrewjahn

AndysBrainBook

This repository contains the files that generate Andy's Brain Book on ReadTheDocs.

SPM_Scripts

Scripts used for the SPM tutorials of Andy's Brain Book

OpenScience_Scripts

Scripts to use with Open Science materials such as fMRIPrep

AFNI_Scripts

Scripts used for fMRI data analysis in AFNI

FSL_Scripts

Scripts for analyzing fMRI data using FSL

MRtrix_Analysis_Scripts

Scripts for analyzing diffusion data with MRtrix

CONN_Scripts

MachineLearning

Code for MVPA analyses, using AFNI's 3dsvm and Matlab's The Decoding Toolbox

FreeSurfer_Scripts

Scripts for the FreeSurfer course of Andy's Brain Book

hello-world

This is my first repository

AndysBrainBook_Old

The Book Version of Andy's Brain Blog

E-Prime_Scripts

Scripts for E-Prime

gifs-as-documentation

The theory and practice of animated GIFs as documentation.

mrtrix3

MRtrix provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and apparent fibre density

oxasl

Python based ASL pipeline based on oxford_asl

PSYCH808

Code and materials for the Psych808 course

umichfmri

Processing pipeline documentation for the University of Michigan fMRI Lab.