LabNeuroCogDevel / fmri_processing_scripts

legacy signal processing leveraging afni, ants, fsl, nipy, robex, and wavelet toolbox - brnfswdktm

MRI Preprocessing

Tools

• preprocessMprage
• preprocessFunctional
  • sliceMotion4d
• ROI_TempCorr.R

Depends

see citations and preprocessFunctional -check_dependencies

• ROBEX
• ANTs
• FSL
• ICA-AROMA
  • v4 aroma: https://github.com/rtrhd/ICA-AROMA
  • orig repackages as ica_aroma: https://github.com/WillForan/ICA-AROMA/tree/maartenmennes-setup.py
• AFNI
• MNI2009c
• Brain Wavelet ToolboX
• NiPy(4dslicewarp)

Testing

Limited testing using bats in test/. see make test (Makefile)

See also

• fmriprep, clpipe, xcp-d
• afni_proc

FYI OSS

The code is "for your information." There are no plans (or avaiable resources) to support external usage.