Bruno Fosso's repositories
MetaShot
MetaShot (Metagenomics Shotgun) is a complete pipeline designed for the taxonomic classification of the human microbiota members. In MetaShot, third party tools and new developed Python and Bash scripts are integrated to analyze paired-end (PE) Illumina sequences, offering an automated procedure covering all the analysis steps from raw data management to taxonomic profiling. It is designed to analyze both DNA-Seq and RNA-Seq data.
MatLab_course
Documents regarding the Claudio Angioni MatLab course
biomas_cwl
basic implementation of BioMaS pipeline in CWL
Language:Common Workflow Language000
CNR_IBIOM_statistics
CNR_IBIOM Twitter account statistics
GPL-3.0000
ITSoneDB-population-pipeline
Scripts used for the population of ITSoneDB
ITSoneDB_qiime
ITSoneDB release for the integration into the QIIME2 pipeline
Language:Python000
SDATA_bio_Desc
Description of the bioinformatic workflow applied in Passaro et al 2019