Maximilian Haeussler's repositories
cellBrowser
main repo: https://github.com/ucscGenomeBrowser/cellBrowser/ - Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org
crisporWebsite
All source code of the crispor.org website
crisporPaper
Code for the CRISPOR article, all data and code to create figures and analysis
multiSub
Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input directory and merges everything into a single output directory. Auto-detects input file formats. Can submit the results to multiple repositories from the command line.
knowledger
A DCC-like system to submit data and metadata and keep track of submissions
browserInstall
An install script for the UCSC Genome Browser
repeatBrowser
scripts to create the repeat browser assembly hub
bioconda-recipes
Conda recipes for the bioconda channel.
brca-exchange
Overall management and deployment of the BRCA Exchange web portal and pipeline scripts
browserDocker
UCSC Genome Browser Docker
crispy-doom
Crispy Doom is a limit-removing enhanced-resolution Doom source port based on Chocolate Doom.
genebrowser
gene table for sspygene
intronProspector
Identify putative introns in RNA-Seq alignments
open-data-registry
A registry of publicly available datasets on AWS
SARS-CoV-2_Sequencing
A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.
seurat-wrappers
Community-provided extensions to Seurat
URD
URD - Reconstruction of Branching Developmental Trajectories