gisaid-format

There are 0 repository under gisaid-format topic.

maximilianh / multiSub
Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input directory and merges everything into a single output directory. Auto-detects input file formats. Can submit the results to multiple repositories from the command line.
sarscov2 sars-cov-2 gisaid-format gisaid-upload gisaid-xls ncbi-ftp genbank tsv ena meta-data fasta gisaid-uploader ncbi
Language:Python 34
CDCgov / seqsender
Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
genbank gisaid ncbi-biosamples ncbi-genbank ncbi-sra ncbi-submission bioinformatics-pipeline biosample gisaid-format gisaid-upload gisaid-uploader sra seqsender ncird-id cdc-influenza-division cdc ncird
Language:Python 29

maximilianh / multiSub