pmid

There are 2 repositories under pmid topic.

• jimmc414 / onefilellm

  Specify a github or local repo, github pull request, arXiv or Sci-Hub paper, Youtube transcript or documentation URL on the web and scrape into a text file and clipboard for easier LLM ingestion

  arxivgithubllmtiktokenyoutube-transcript-apidoiipynbpdfpmidsci-hubtextpapersrepositorypull-request
  Language:Python 1694
• pubmed_parser

  titipata / pubmed_parser

  :clipboard: A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset

  pythonpubmed-centralpubmed-parserparsexmlmedline-xmlarticlenlpdoipmidparser
  Language:Python 691

• Tishacy / SciDownl

  An unofficial api for downloading papers from SciHub via DOI, PMID, title

  scihubdoipaperpdfdownloaderpmid
  Language:Python 245

• rougier / persid

  Persistent identifier library for GNU Emacs

  arxivbibtexdoiemacsisbnissnlisppmcidpmid
  Language:Emacs Lisp 37

• pykong / PyperGrabber

  Fetches PubMed article IDs (PMIDs) from email inbox, then crawls PubMed, Google Scholar and Sci-Hub for respective PDF files.

  pmidgoogle-scholarpubmedsci-hubscraperpdfemail-inboxcrawlerpython
  Language:Python 34
• pmidcite

  dvklopfenstein / pmidcite

  Download "Cited by" data from the NIH for any paper with a PubMed ID

  literature-searchpubmedcommand-line-toolncbipmidnih-citation-datacitation-downloadersnowballingcitation-analysisliterature-reviewcitation-countslibrarygoogle-scholarcitationsgoogle-searchbioinformatics
  Language:Python 32

• ropensci / citecorp

  Client for the Open Citations Corpus

  opencitationscitationsdoipmidpmcidsparqlrr-packagerstats
  Language:R 11

• fphammerle / pubmed-bibtex

  Generate BibTeX Entries for PubMed Publications

  pubmedlatexbibtexreferencepmidcitation
  Language:Python 8

• wcmc-its / ReCiter-Scopus-Retrieval-Tool

  A tool for retrieving articles from Scopus. Can work as a standalone application or in conjunction with the author disambiguation application, ReCiter.

  scopuselsevierreciterpmidpubmedpublicationpublication-miningpublication-dataauthor-detectiondisambiguationawsaws-dynamodbaws-elasticbeanstalkspring-bootjacksonswaggersquiggly
  Language:Java 4

• ccameron / BibPMC

  BibPMC - add PubMed Central unique identifiers to a BibTeX file

  bibtexlatexpubmed-centralpmcidpmid
  Language:Python 2

• ropensci-archive / rcitoid

  :warning: ARCHIVED :warning: Citation data via Wikimedia using the Citoid service

  rrstatsapi-clientwikimediacitoiddoipmidpmcidisbnr-package
  Language:R 2

• awandahl / dromedar_diva_scopus

  divascopusscopus-apidiva-databasemissing-identifiersswepubscopusidisipmiddoi
  Language:R 1

• jcvb / doi-pmid-finder

  Find and validate all Doi(s), Pmid(s) on a string, returning a array of results.

  doijavascriptpmid
  Language:JavaScript 1

• kinleydhinata / PubMed-SyRev-Scraper

  A Python tool for systematic review scraping PubMed articles based on specified search queries.

  articlededuplicationdoiparserpmidpubmedpubmed-abstractspubmed-centralpubmed-parser
  Language:Python 1

• MohammadHalawani / pubmed-articles-grabber

  Grabs and downloads full-text versions of PubMed records in different formats.

  articlepmidpubmed-articles-grabberpubmed-recordsxml
  Language:Python 1

• GarriManasaryan / article_citation_bot

  A reference (citation) generating bot by PMID or DOI

  doipmidpubmedpythontelebottelegram-bot
  Language:Python 0

• nancyshaji / PubMedFullText

  Provides link of the full-text article upon giving PubMed's PMID

  pubmed-recordspubmedpmidbeautifulsouppubmed-articlespubmed-centralpython3webscraping
  Language:Python 0

• UofGMarkWong / TRANSGENE

  Source codes of API queries in R (made available together with datasets) of Medical Translation in the History of Modern Genomics (TRANSGENE)

  renaepmcscopusapitransgenenetwork-analysispmidscopus-analysisebi
  0

• ganemedelabs / citeease-chrome-extension

  Automatically detects URLs, DOIs, PMIDs, PMCIDs, and ISBNs on webpages, and generates citations in your preferred style.

  chrome-extensioncitationcitation-generatorcitation-style-languagecsldoiisbnpmcidpmidurl
  Language:TypeScript

• ganemedelabs / citeease-cli

  A CLI tool that generates formatted citations (references) based on various unique identifiers, including URL, DOI, ISBN, PMID, and PMCID.

  bibliographybibliography-generatorcitationcitation-style-languagecli-toolcommand-linecsl-jsondoiisbnpmcidpmidreferenceurlcitaion-generator
  Language:TypeScript

• shreyas1701 / Pubmed-PMC-Parser

  webscrapingpython3pubmed-parserpmc-articlespmc-parserpmidretrive
  Language:Python
• PMIDBasedArticleSelector

  xonix2001 / PMIDBasedArticleSelector

  PubMed爬虫（标题、摘要、期刊、引用），PMID检索，中英翻译，导出Excel

  abstractpmidpubmed
  Language:Python