Abhinav Sharma's repositories
abhi18av.com
My personal website and blog
docker-protoc
Docker images for generating protocol buffer definitions
emilyncosta.com
My Blog and CV
MTBseq_source
MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.
nextflow-vim
Nextflow plugin for VIM
nf-biojava
a nextflow plugin to integrate BioJava
nf-staging-stress-stage
Test script to stress test Nextflow staging mechanism.
awesome-stars
A curated list of my GitHub stars!
fetchngs
Pipeline to fetch metadata and raw FastQ files from public and private databases
methylseq
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
nf-nomad
[WIP] Hashicorp Nomad executor plugin for Nextflow
nf-plugins
Nextflow plugins index repository
pathogen-profiler
This repository contains python classes and functions to quickly create a profiling tool for pathogen NGS data
samplesheetgen-clj
A Babashka (Clojure) utility for generating samplesheets for different platforms from a base samplesheet
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
TBProfiler
Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data
wave
On-demand containers provisioning service