ncbi-sra
There are 1 repository under ncbi-sra topic.
- pysradbLanguage:Python 297
louiejtaylor / grabseqs
A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
Language:Python 104urmi-21 / pyrpipe
Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
Language:Python 77- r2g
yangwu91 / r2g
A homology-based, computationally lightweight pipeline for discovering genes in the absence of an assembly
Language:Python 49 CDCgov / seqsender
Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
Language:Python 29avsastry / modulome-workflow
Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA
Language:HTML 15- Language:Perl 8
stajichlab / biosample_metadata
Extract metadata from biosamples in NCBI
Language:Python 8enviro-lab / ncbi-submit
A tool to prepare files and run/monitor programmatic submissions to NCBI
Language:Python 2tracywong117 / NCBI-get-all-children-organism-under-ancestor
This Python script retrieve all children organism under an ancestor in NCBI taxonomy.
Language:Python 1- Language:Python 1
The Docker integration for the r2g project.
Language:Dockerfile 0almeidasilvaf / plant_transcriptomes
Data and code used in the Plant Genomes dashboard
Language:Rcodeearn / sra-explorer
a native enumaltor for the sra explorer and it will explore the sra and will bring all the information and will generate the go to files for the analysis. You simply have to provide as many as much as posisble SRA accessions for the use of the same.
Language:Shellmaurya-anand / sra-annotator
A command-line tool for retrieving annotations from the NCBI SRA.
Language:PythonNicholas-Lewis-USDA / NCBI-Biosample-builder
Pulls Metadata from NCBI based on Sample name or SRR #
Language:PowerShellwrf / taxonomy_database
frequency of high level ranks in sequence databases
Language:Python
