fbergmann

libSEDML

SED-ML library based on libSBML

spatial-sbml

libraries & tools for spatial simulation of SBML models

conan-libnuml

Conan recepie for libnuml

conan-libsbml

Conan build recipe for libSBML

conan-libsedml

conan recipe for libSEDML

libsbml_test

test for libsbml git repo

memesa-tools

This collection of tools forms the basis of a pipeline for the complete enumeration of the number of solutions present in a model that maximizes a single objective function

zipper

C++ wrapper around minizip compression library

AMICI

Advanced Multilanguage Interface to CVODES and IDAS

bioconda-recipes

Conda recipes for the bioconda channel.

Biosimulations_COPASI

COPASI Simulator for BioSimulations

CoRC

The Copasi R connector, a high-level R API for Copasi

deviser

Design Explorer and Viewer for Iterative SBML Enhancement of Representations

dsmts

Discrete stochastic models test suite

FBA_perturbation

a toolbox to perturb FBA flux distribution in constraint-based metabolic networks

fbc_curation

FROG analysis in python for the reproducibility of FBC models

fbergmann.github.io

user page

harmony_scripts

Utility scripts written during HARMONY 2021

liblx

The XML parser portion of LibSBML as a separate library.

makesbml

Simple site to convert antimony to sbml

omex-frog

PEtab

PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology

pyABC

distributed, likelihood-free inference

pyabc-copasi

Example Scripts for using COPASI simulations in pyABC

PyEnzyme

PyEnzyme

pyodide-copasi

Vue3 Project using Pyodide / basico and python-copasi emscripten

sed-ml.github.io

SED-ML website

SimBioUI

Web systems biology simulator

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

test-copasi

Test for Github Actions