YaoXinZhi

Convert-Bert-TF-checkpoint-to-Pytorch

Convert Bert TF-checkpoint to Pytorch

BERT-for-20NewsGroups

《2021医学健康数据分析与挖掘》课程论文 -- 基于BERT的20NewsGroups数据集新闻分类实验

Bi-LSTM-Attention

研一深度学习课程作业 Bi-LSTM + Attention （nice code）

BERT-for-BioNLP-OST2019-AGAC-Task2

BERT-for-BioNLP-OST2019-AGAC-Task2

BERT-CRF-for-BioNLP-OST2019-AGAC-Task1

AGAC-BioNL-OST2009-Task1 BERT+CRF

BioNLP-Toolkit

Commonly used BioNLP toolkit for myself.

Cancer-Alterome

Cancer-Alterome is a comprehensive and curated dataset that focuses on the investigation of regulatory events caused by gene alteration in the context of cancer.

Code-accumulation

Demo code + comment record

enrRiceTrait

Rice Trait Enrichment

PheSeq

PheSeq, A Bayesian Deep Learning Model to Enhance and Interpret the Gene Disease Association Studies

PMID-Crawling

根据titile信息 爬取PMID

AD-LitPathoNet

Text-mined knowledgebase for AD pathology mechanism investigation

Biostatistics-course-papers

Biostatistics course papers

BLAH8-LLM-for-Rice-GARE

Bioregulatory Event Extraction using Large Language Models: A Case Study of Rice Literature

cgat-apps

cgat-apps repository

Crawl-Journal-or-Literature-Information

Crawl journal/literature information (ISSN, Impact Factor, H-index, AltMetric et.al.)

DAG-WGAN

This is the repository containing the source code for DAG-WGAN: Causal Structure Learning With Wasserstein Generative Adversarial Networks, which is based on the DAG-GNN framework.

Dynamic-programming-algorithm-and-its-improved-algorithm-in-sequence-matching

Dynamic programming algorithm and its improved algorithm in sequence matching, including X-drop and band-DP

Embedding-experiment-in-BioNLP-course

Embedding experiment in BioNLP course

GDAMDB

Messy-little-code

Messy little code

NCBI_Crawling

NCBI_***info_crawler for friend.

Ontology-Edit

An Ontology-Edit (work in progress)

Plant-Trait-Enrichment

A python package for plant trait enrichment.

PTO

植物表型本体搜索

PURE

Code and models for the paper "A Frustratingly Easy Approach for Entity and Relation Extraction"

Rice-Trait-Ontology

Rice Trait Ontology (RTO)

Skip-Gram-NS-with-pytorch

pytorch implements basic skip-gram algorithm and skip-gram algorithm with negative sampling.

vcf2phylip

Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

YaoXinZhi

Config files for my GitHub profile.