Yao-Xinzhi's repositories
Convert-Bert-TF-checkpoint-to-Pytorch
Convert Bert TF-checkpoint to Pytorch
BERT-for-20NewsGroups
《2021医学健康数据分析与挖掘》课程论文 -- 基于BERT的20NewsGroups数据集新闻分类实验
Bi-LSTM-Attention
研一深度学习课程作业 Bi-LSTM + Attention (nice code)
BERT-for-BioNLP-OST2019-AGAC-Task2
BERT-for-BioNLP-OST2019-AGAC-Task2
BERT-CRF-for-BioNLP-OST2019-AGAC-Task1
AGAC-BioNL-OST2009-Task1 BERT+CRF
BioNLP-Toolkit
Commonly used BioNLP toolkit for myself.
Cancer-Alterome
Cancer-Alterome is a comprehensive and curated dataset that focuses on the investigation of regulatory events caused by gene alteration in the context of cancer.
Code-accumulation
Demo code + comment record
enrRiceTrait
Rice Trait Enrichment
PMID-Crawling
根据titile信息 爬取PMID
AD-LitPathoNet
Text-mined knowledgebase for AD pathology mechanism investigation
Biostatistics-course-papers
Biostatistics course papers
BLAH8-LLM-for-Rice-GARE
Bioregulatory Event Extraction using Large Language Models: A Case Study of Rice Literature
cgat-apps
cgat-apps repository
Crawl-Journal-or-Literature-Information
Crawl journal/literature information (ISSN, Impact Factor, H-index, AltMetric et.al.)
DAG-WGAN
This is the repository containing the source code for DAG-WGAN: Causal Structure Learning With Wasserstein Generative Adversarial Networks, which is based on the DAG-GNN framework.
Dynamic-programming-algorithm-and-its-improved-algorithm-in-sequence-matching
Dynamic programming algorithm and its improved algorithm in sequence matching, including X-drop and band-DP
Embedding-experiment-in-BioNLP-course
Embedding experiment in BioNLP course
Messy-little-code
Messy little code
NCBI_Crawling
NCBI_***info_crawler for friend.
Ontology-Edit
An Ontology-Edit (work in progress)
Plant-Trait-Enrichment
A python package for plant trait enrichment.
PURE
Code and models for the paper "A Frustratingly Easy Approach for Entity and Relation Extraction"
Rice-Trait-Ontology
Rice Trait Ontology (RTO)
Skip-Gram-NS-with-pytorch
pytorch implements basic skip-gram algorithm and skip-gram algorithm with negative sampling.
vcf2phylip
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
YaoXinZhi
Config files for my GitHub profile.