zakandrewking

escher

Build, share, and embed visualizations of metabolic pathways.

hindsight

y-ome

A workflow to define the y-ome for E. coli K-12 MG1655

scrape_ecocyc

Get all the gene and summaries from EcoCyc

tinier

Tinier is a library for building tiny reactive components in JavaScript. Designed with D3.js in mind.

optSwap

Matlab scripts for OptSwap and OptYield

brainshare

Brainshare is a place to create and share scientific knowledge

cobrapy

COBRApy is a package for constraints-based modeling of biological networks

tinier-todo

Todo MVC with tinier

.doom.d

.emacs.d

emacs setup

brainshare-osprey

brainshare-pelican

brainshare ideas repo using next.js

cobrame

COBRA Toolbox for genome-scale models of metabolism and expression (ME-models)

d3-brush

Select a one- or two-dimensional region using the mouse or touch.

icsb-tutorial

Teaching material for the ISCB tutorial on cobrapy, cameo, escher and dd-decaf

ipyleaflet

A Jupyter - Leaflet.js bridge

js-framework-benchmark

A comparison of the perfomance of a few popular javascript frameworks

jupyter-widget-example

langchain

⚡ Building applications with LLMs through composability ⚡

minspan

mpl_recipes

Matplotlib examples for systems biology

new_app

New flutter app

optgp-run

run optgpsampler with docker

rc-slider-preact

React Slider

sqlacodegen

Automatic model code generator for SQLAlchemy

storage-py

theseus

Scripts for accessing and reconstructing genome-scale models

tinier-dom

React-style DOM declarations for Tinier

video-quickstart-python

Twilio Video server-side web app in Python