pharmacome / semi-automated-curation

Results from semi-automated curation with INDRA/PyBEL

Semi-Automated Curation Results

This repository contains the results of semi-automated curation in the Human Brain Pharmacome project.

Installation

This repository can be installed from GitHub using pip with the following command:

$ pip install git+https://github.com/pharmacome/semi-automated-curation.git

For developers, this repository can be cloned and installd with the following commands:

$ git clone https://github.com/pharmacome/semi-automated-curation.git hbp-semi-automated-curation
$ cd hbp-semi-automated-curation
$ pip install -e .

Usage

It can be imported and used with the following. Note that it installs at a different name than the GitHub repository.

>>> from hbp_semi_automated_curation import repository
>>> graph = repository.get_graph()
>>> graph.summarize()

Content

The curation can be found in the src/curation folder.

License

• BEL scripts in this repository are licensed under the CC BY 4.0 license.
• Python source code in this repository is licensed under the MIT license.

Acknowledgements

This work was done during the Human Brain Pharmacome project funded by the Fraunhofer Society's MAVO program.