Giters
Monarch Initiative (monarch-initiative)

Monarch Initiative

monarch-initiative

Geek Repo

Cross-species disease discovery and diagnosis

Location:Globally-distributed team (see https://monarchinitiative.org/page/team)

Home Page:https://github.com/monarch-initiative/monarch-app/blob/master/README.md#about-monarch

Github PK Tool:Github PK Tool

Monarch Initiative's repositories

ontogpt

LLM-based ontological extraction tools, including SPIRES

Language:Jupyter NotebookLicense:BSD-3-ClauseStargazers:497Issues:16Issues:159

mondo

Mondo Disease Ontology

Language:Jupyter NotebookLicense:CC-BY-4.0Stargazers:213Issues:10Issues:3302

koza

Data transformation framework for LinkML data models

Language:PythonLicense:BSD-3-ClauseStargazers:41Issues:26Issues:62

phenol

phenol: Phenotype ontology library

Language:JavaLicense:BSD-3-ClauseStargazers:21Issues:9Issues:224

monarch-app

Monarch Initiative website and API

Language:PythonLicense:BSD-3-ClauseStargazers:12Issues:20Issues:397

monarch-ingest

Data ingest application for Monarch Initiative knowledge graph using Koza

Language:PythonStargazers:12Issues:15Issues:313

hpoannotqc

HPO Annotation QC

Language:JavaLicense:MITStargazers:11Issues:0Issues:0

pheval

A framework for empirical evaluation of phenotype matching and prioritisation

Language:PythonLicense:Apache-2.0Stargazers:10Issues:8Issues:175

vertebrate-breed-ontology

Language:MakefileStargazers:8Issues:6Issues:82

fenominal

Phenomenal text mining for disease and phenotype concepts

Language:JavaLicense:GPL-3.0Stargazers:7Issues:6Issues:53

omim

Data ingest pipeline for OMIM.

Language:PythonStargazers:6Issues:7Issues:81

phenopacket-store

Collection of phenopackets

Language:Jupyter NotebookLicense:BSD-3-ClauseStargazers:6Issues:5Issues:48

pyphetools

Python Phenopacket Tools

Language:PythonLicense:MITStargazers:6Issues:8Issues:42

mondo-ingest

Coordinating the mondo-ingest with external sources

Language:Jupyter NotebookStargazers:5Issues:7Issues:294

oncoexporter

Cancer data to GA4GH phenopacket

Language:Jupyter NotebookLicense:MITStargazers:5Issues:4Issues:38

genophenocorr

Genotype Phenotype Correlation

Language:Jupyter NotebookLicense:MITStargazers:4Issues:5Issues:77

monarchr

R package for easy access, manipulation, and analysis of Monarch KG data

Language:RLicense:NOASSERTIONStargazers:4Issues:3Issues:10

phenio

An integrated ontology for Phenomics

Language:MakefileLicense:BSD-3-ClauseStargazers:4Issues:13Issues:42

pheval.exomiser

Exomiser plugin for PhEval.

Language:PythonStargazers:3Issues:6Issues:31

cat-merge

Tooling for merging individual source KGX files in the Monarch ingest pipeline

Language:PythonStargazers:2Issues:17Issues:25

icd11

ICD11 foundation ingest.

Language:ShellStargazers:1Issues:0Issues:0

monarch-phenologs

Language:PythonLicense:BSD-3-ClauseStargazers:1Issues:0Issues:0

ga4gh-phenopacket-core

Python convenience wrappers for Phenopacket Schema

Language:PythonStargazers:0Issues:0Issues:0

hpotools

Human Phenotype Ontology tools

Language:JavaLicense:MITStargazers:0Issues:0Issues:0

medgen

MedGen ingest.

Language:PythonStargazers:0Issues:5Issues:11

monarch-robot-plugins

Repository to manage monarch specific ROBOT extensions

Language:JavaStargazers:0Issues:0Issues:0

ncbi-gene

Language:PythonStargazers:0Issues:0Issues:0

NCBI-gene-pyobo

Language:PythonLicense:MITStargazers:0Issues:0Issues:0

pheval.template

Language:PythonStargazers:0Issues:0Issues:0

rppr_stats

Language:MakefileStargazers:0Issues:0Issues:0