cthoyt

pystow

👜 Easily pick a place to store data for your Python code.

cookiecutter-snekpack

🍪 A cookiecutter package for an enlightened python package

umls_downloader

Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically

zenodo-client

A tool for automated uploading and version management of scientific data to Zenodo

autoreviewer

👁️‍🗨️ Scientists often do the same bad stuff. Automate giving feedback during peer review.

pyrdle

Play Wordle in the CLI. Write an algorithm to play Wordle for you. Ruin all of the fun you've been having.

pybacting

A Python wrapper around Bacting (https://github.com/egonw/bacting)

quickstatements_client

A data model and client for QuickStatements (for Wikidata)

semantic-pydantic

Annotate data models in Pydantic and APIs in FastAPI with the Bioregistry to make them more FAIR

cthoyt.github.io

My personal website, served at https://cthoyt.com

orcid_downloader

Get ORCID in bulk and free it from XML

obo-community-health

🫀 Check the OBO Foundry repositories to see what's going on

orcidio

🐨 Make a subset of ORCID available as an OWL ontology

rorio

Convert the Research Organization Registry (ROR) into an OWL instance ontology

biomodels-metadata-analysis

Generate a summary of metadata annotations in the BioModels database

flask-dance-with-redirects

Extend Flask-Dance to handle URL redirects

kgx

KGX is a Python library for exchanging Knowledge Graphs

more_node2vec

animated_barnacle

May Institute Demo 2024

lsun

LSUN Dataset Documentation and Demo Code

OBOFoundry.github.io

Metadata and website for the Open Bio Ontologies Foundry Ontology Registry

ontology-access-kit

Ontology Access Kit

pubmed_embedding

Building a pubmed graph, automatically.

reach

Reach Biomedical Information Extraction

resume

The résumé of Charles Tapley Hoyt

ro-summary

Scripts for generating summaries of the Relation Ontology

SmartChemist

snekpack-demo

Demonstrates using the cookecutter-snekpack template.

w3id.org

Website source code for w3id.org.

WikidataIntegrator

A Wikidata Python module integrating the MediaWiki API and the Wikidata SPARQL endpoint