chado

There are 0 repository under chado topic.

• tripal / tripal

  The Tripal package is a suite of Drupal modules for creating biological (genomic, genetic, breeding) websites. Visit the Tripal homepage at http://tripal.info for documentation, support, and other information. The Drupal project page is at http://drupal.org/project/tripal.

  tripaldrupalbiological-datacms-extensionchadohacktoberfesttripal-core
  Language:PHP 66

• lmb-embrapa / machado

  This repository provides users with a framework to store, search and visualize biological data.

  bioinformaticspythondjangochadogmoddjango-rest-framework
  Language:PLpgSQL 25

• GMOD / docker-apollo

  :whale: Apollo 2.X Docker Image

  biocurationgenomeannotationapollobioinformaticsdockerchado
  Language:Shell 10

• galaxy-genome-annotation / dockerized-gmod-deployment

  :whale::bar_chart::books: Galaxy + Apollo + Chado + Tripal + JBrowse + JBrowse REST API + PostGraphQL + JBrowse GraphQL Experiment all as a docker-compose.yml

  dockerchadotripaljbrowseapollogalaxybioinformatics
  Language:Python 5

• tripal / tripal_elasticsearch

  chadoelasticsearchintegrationsearchtripal
  Language:PHP 5

• tripal / tripal_analysis_expression

  Extension module for the Tripal toolset to show differential expression data. This module was made for Drupal 7, Tripal 3, and Chado 1.3.

  tripalanalysisgene-expressionloaderchado
  Language:PHP 4

• galaxy-genome-annotation / chado-schema-builder

  compiles copies of the Chado database and dumps the SQL for use in other tools.

  bioinformaticsautomationgenomicschado
  Language:Python 3

• ropensci-archive / rflybase

  :no_entry: ARCHIVED :no_entry: Interface to 'FlyBase'

  chado-databaseflybase-databaseflybasechadorrstatsr-package
  Language:R 3

• statonlab / docker-containers

  Offers 3 different flavors of docker containers that can be built upon to deploy Drupal and Tripal sites.

  tripaldrupalchadotripal-developer-toolsdocker-image
  Language:Dockerfile 3

• statonlab / tripal_alchemist

  entity converter for tripal 3

  tripalchadodrupal-7admin-tooltripal-developer-toolstripal3tripal3-compatible
  Language:PHP 3

• COMBAT-TB / combattbmodel

  COMBAT-TB model is a Chado inspired graph model for genome annotation.

  graph-modelcombat-tb-modelchadoneo4jgenome-annotationpy2neo
  Language:Python 2

• tripal / chado_search

  Mainlab Chado Search: enabling advanced search function for a Tripal/Chado database

  chadomain-labsearchtripal
  2

• tripal / mainlab_chado_loader

  Mainlab Chado Loader

  tripalchadoloadermain-lab
  Language:PHP 2

• tripal / tripal_genetic

  Extends core Tripal with support focused on genotypic data, genetic markers, sequence variants, etc.

  biological-datachadogenetic-variationtripal-coretripal4
  1

• UofS-Pulse-Binfo / genotypes_loader

  A Drush-based loader for VCF files that follows the genotype storage rules outlined by ND genotypes.

  tripalgenotypechadoloadervcftripal3-compatible
  Language:PHP 1

• jcvi-plant-genomics / medicago-tripal

  Drupal/Tripal code for the MedicagoGenome.org site (MTGD)

  drupaltripalchadogmod
  Language:PHP 0

• EvanCarroll / mumine

  Work pertaining to import and analytics of unknown data source (mass spec), example of Chado integration

  postgresqlchadoflybase
  Language:PLpgSQL

• JazzEd-EdTech / .git-violethaze74

  nextcloudnodejsgh-pagesgithub-actionssnapcraftcharmed-kubernetesjujumicrok8srrstudiogalaxycloudmanchadodebian-meddeep-learningbiolinuxbioinformatics-pipelinenih
  Language:PHP

• JazzEd-EdTech / biojava

  :book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.

  bioinformaticsgalaxy-projectcloudmanbiolinuxterraformchadoigvjupyterphpmyadminrealtime-database
  Language:Java

• statonlab / tripal_dev_seed

  A minified bioinformatics dataset for seeding Tripal sites

  tripaltripal3-compatibledatasetbioinformaticstripal-developer-toolschado
  Language:Python