toxicology
There are 4 repositories under toxicology topic.
- chembl-downloader
cthoyt / chembl-downloader
Write reproducible code for getting and processing ChEMBL
Language:Jupyter Notebook 73 shapiromatron / hawc
Health Assessment Workspace Collaborative, a content management system for systematic reviews
Language:Python 21enanomapper / ontologies
The eNanoMapper ontology
Language:Python 18- Language:R 13
- toxpiRLanguage:R 11
i-shah / ml-organ-tox
Data-driven chemical-induced toxicity prediction by machine learning using chemical and bioactivity data
Language:Jupyter Notebook 10asancpt / caffsim
R package for simulation of caffeine concentration <doi:10.12793/tcp.2017.25.3.141>. https://asancpt.github.io/caffsim
Language:R 9phuse-org / toxSummary
R Shiny App to Visualize and Summarize Repeat-Dose Toxicology Study Results
Language:R 9- IWP_Reborn
CIRAIG / IWP_Reborn
The rebirth of IMPACT World+ in a fully automated and transparent fashion.
Language:Python 8 InSilicoVida-Research-Lab / AOPWiki_Explorer
A query engine to retrive information from AOP wiki graph database.
Language:Jupyter Notebook 7elixir-europe / toxicology-community
Repository to coordinate the work of the Toxicology Community.
andresilvapimentel / SARAlerts
SARAlerts is a code to generate structural alerts (toxic alerts) using Local Interpretable Model-Agnostic Explanations (LIME) of machine learning models from Tox21, Clintox, and Sider datasets.
Language:Jupyter Notebook 5- Language:R 5
evanfloden / nf-toxomix
OpenRiskNet pipeline for TGX case study: toxicology predictions based on transcriptomic profiles
Language:Groovy 5Yousuf28 / Awesome-SEND
links related to SEND/Nonclinical toxicology
Language:HTML 5- ANDA
EskelandLab / ANDA
ANDA: An open-source tool for automated image analysis of in vitro neuronal cells
Language:Python 4 akokai / commongroups
Molecular structure-based classification of chemicals in known hazard groups
Language:Python 3BBBP Explainer is a code to generate structural alerts of blood-brain barrier penetrating and non-penetrating drugs using Local Interpretable Model-Agnostic Explanations (LIME) of machine learning models from BBBP dataset.
Language:Jupyter Notebook 3- Language:R 3
bioclipse / bioclipse.opentox
OpenTox functionality for Bioclipse.
Language:Java 3legacy-repo / biomedgps-studio
[Frontend] A knowledge graph system with graph neural network for drug discovery, disease mechanism and biomarker screening.
Language:TypeScript 3RubenVG02 / BioInsectiNet
This Python project uses neural networks and genetic algorithms to design bioinsecticide compounds targeting specific proteins. By leveraging IC50 values from FASTA sequences, it generates and optimizes SMILES representations, enhancing the efficacy and specificity of bioinsecticides.
Language:Python 3USEPA / BMDS-UI
U.S. EPA Benchmark Dose Modeling Software User Interface (BMDS Desktop and BMDS Online)
Language:CSS 3Endocrine Disruption Explainer is a code to generate structural alerts of endocrine disruption of chemcial compounds using Local Interpretable Model-Agnostic Explanations (LIME) of machine learning models from TOX-21, EDC, and EDKB-FDA datasets.
Language:Jupyter Notebook 2My personal website, served at https://cthoyt.com
biological-expression-languagemachine-learningknowledge-graphsknowledge-graph-embeddingsdrug-discoverydrug-repurposingtarget-prioritizationtarget-validationbiocurationontologiesbioinformaticscheminformaticstoxicologywikidataobofoundrydeep-learningproteochemometricsutterancesdrug-synergyartificial-intelligenceLanguage:HTML 2eurotox-2023-aitox-cec / course-materials
workshop materials for "A hands-on introduction to applied artificial intelligence in toxicology"
Language:Jupyter Notebook 2Data and code for rodent hepatotoxicity prediction
Language:Jupyter Notebook 2ideaconsult / ambit-docker
Run the AMBIT services on Docker
Language:Shell 2- pydrc
Mr-Mathias-F / pydrc
A Python module for analysis and visualization of dose-response data
Language:Python 2 A meteor-based table-building application for epidemiology, and mechanistic data used in the human-health assessment of chemicals.
Language:JavaScript 2Mutagen Explainer is a code to generate structural alerts of mutagenicity of chemcial compounds using Local Interpretable Model-Agnostic Explanations (LIME) of machine learning models from Bursi and Hansen Ames mutagenicity datasets.
Language:Jupyter Notebook 1biobricks-ai / adrecs
An adverse drug reaction (ADR) is described by the World Health Organization (WHO) as a 'response to a medicine which is noxious and unintended, and which occurs at doses normally used in man
Language:Dockerfile 1joycebyang / SMaRt
SMaRt: A Toxicity Classification System through SMILES and Multimodal Representation to Cross-check Hazardous Chemicals
Language:Python 1ontox-project / xploreaop
The public version of the 'XploreAOP' Shiny application to interactively visualize AOP Networks
Language:HTML 1StyrbjornKall / TRIDENT_application
Source code for the web application associated with "Transformers enable accurate prediction of acute and chronic chemical toxicity in aquatic organisms".
Language:Python 1- Language:Clojure 1
