BU-ISCIII

iskylims

is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.

taranys

cg/wgMLST allele calling software, schema evaluation and allele distance estimation for outbreak reserch.

relecov-tools

set of helper tools for the assembly of the different elements in the RELECOV platform (Spanish Network for genomic surveillance of SARS-Cov-2) as data download, processing, validation and upload to public databases, as well as analysis runs and database storage.

bacterial_wgs_training

In this training course you will find theory and practice material for introducing yourself to wgs analysis for bacterial, including outbreak investigation.

BU-ISCIII

Our Wiki and main public documentation repository.

introduction_to_bioinformatics

In this training course you will find theory and practice material for introducing yourself to the basics of high throughput sequencing data analysis.

virology_training

This repo contains all the resources needed to follow the virology training to analyze viral sequencing data.

buisciii-tools

set of helper tools for bu-isciii management of its core services portfolio.

MPXstreveal

Monkepox STR reveal (MPXstreveal) a new draft approach for detecting and curating low complexity regions in monkeypox genomes using massive parallel sequencing.

flu_resistance

Repository containing influenza resistance data in JSON format and scripts to generate and update these files from source datasets.

infectious-diseases-toolkit

Infectious diseases toolkit

pikavirus

New pikavirus in dsl2

relecov-platform

genomic surveillance web platform for respiratory viruses used by RELECOV network in Spain

viralrecon

Assembly and intrahost/low-frequency variant calling for viral samples

cna_bacterial_wgs_training

In this training course you will find theory and practice material for introducing yourself to wgs analysis for foodborne bacteria

galaxy_virologist_training

Galaxy training for virology profiles

relecov_biohackaton

relecov_qc_exercise

16S-Qiime-protocol

Pipeline del análisis comenzado el día 4 de mayo de 2021, tema: "bloqueadores"

assemblybacterias

bacass

Simple bacterial assembly and annotation pipeline

bacterial_assembly-nf

Haploid bacterial assembly and automatic annotation implemented using Nextflow

bu-hack-a-isciii

buisciii.github.io

BU-ISCIII team website

eutils_search_cd44_paper

This repository contains a custom python script that finds citations that include the name of a gene along with a condition provided by the user. P.e brca2+AND+(MIGRATION)

introduction_to_hpc

In this training course you will find theory and practice material for introducing yourself to the basics of high-performance computing (HPC) environment.

nexstrain_relecov

pdn_priority_pathogens

PikaVirus_OLD

spanish-pathogens-portal

A minimal/example hugo site for node pathogens portal. Checkout the demo site following the URL below