pancreatic-cancer

There are 1 repository under pancreatic-cancer topic.

sagizty / Multi-Stage-Hybrid-Transformer
Official release of MSHT: Multi-stage Hybrid Transformer for the ROSE Image Analysis of Pancreatic Cancer https://ieeexplore.ieee.org/document/10006398
cytopathology pancreatic-cancer transformer-models deep-learning multi-scale-model hybrid-models
Language:Jupyter Notebook 68
greenelab / pdx_exomeseq
Pipeline analysis for whole exome sequencing of pancreatic cancer PDX models
pdx wes cancer pipeline mutation pancreatic-cancer sequencing notebook analysis methodology
Language:HTML 21
IvanKuchin / pancreas_segmentation
Tensorflow implementation of a 3D-CNN U-net with Grid Attention and DSV for pancreas segmentation trained on CT-82.
ml ai 3d-convolutional-network 3d-cnn attention-mechanism attention-model 3d-convolutions dsv deep-supervision u-net pancreatic-cancer pancreas pancreas-segmentation
Language:Python 9
Srizon143005 / PancreaticCancerBiomarkers
Pancreatic Cancer Biomarkers Identification Codes & Files
pancreatic-cancer biomarkers t-test differentially-expressed-genes differentially-expressed-micrornas rstudio python3 geo gse15471 gse16515 gse28735 gse41372
Language:Python 6
uw-loci / gnn-pccp
Graph neural networks for PDAC vs CP in histology
computational-histopathology computational-pathology histopathology pancreatic-cancer tumor-detection collagen-fibers deep-learning deep-neural-networks graph-neural-networks pancreatitis
Language:Jupyter Notebook 5
PascaDiMagliano-Lab / Gift-of-Life-Public-Repository
This is repo for the code used in Gift-of-Life paper from Pasca lab
pancreatic-cancer pdac rna-seq single-cell-rna-seq spatial-transcriptomics
Language:R 4
dmrodriqu / pancreas
A concise VTK volume rendering API written to render Pancreatic Ductal Adenocarcinoma
python vtk pancreatic-cancer medical-imaging volume-rendering isosurfaces multidimensional-transfer-function
Language:Python 2
SaashaJoshi / Pancreas-Cancer-Diagnosis
Pancreatic Cancer Diagnosis Project; undertaken at Design and Innovation Center (DIC), an initiative of the Ministry of Human Resource and Development (MHRD), India
cadx deep-learning pancreatic-cancer segmentation denoising images ct-scan-images image-processing image-segmentation image-classification medical-image-processing
Language:Jupyter Notebook 1
skoc / pancreatic-neuroendocrine-deep-learning
Pancreatic Neuroendocrine Tumors Image Analysis with Deep Learning
medical-image-analysis pancreatic-cancer pannet pytorch resnet tumor-classification
Language:Jupyter Notebook 1
stefanie-baerthel / combinatorial_treatment_analysis
KRAS-mutant pancreatic ductal adenocarcinoma (PDAC) is highly immunosuppressive and resistant to targeted therapies, immune checkpoint blockade and engineered T cells. In this study, we performed a systematic high throughput combinatorial drug screen and identified a synergistic interaction between the MEK inhibitor trametinib and the multi- kinase inhibitor nintedanib. Using single cell RNA sequencing and immunophenotyping, we show that the combination therapy reprograms the immunosuppressive microenvironment and primes cytotoxic and memory T cells to infiltrate the tumors, thereby sensitizing mesenchymal PDAC to PD-L1 inhibition.
scrna-seq-analysis scanpy treatment-effects pancreatic-cancer
Language:Jupyter Notebook 1
codiceviola / codiceviola
💜 Codice Viola is committed to improving the survival and quality of life of patients with pancreatic adenocarcinoma
pancreas pancreatic-cancer adenoarcinoma
Language:HTML 0
codiceviola / corona-donuts
Fancy basic vizs for
pancreatic-cancer pancreas sveltejs d3js d3-visualization svelte
Language:HTML 0
amatov / DiseaseDetectionUrine
alzheimers-disease amyotrophic-lateral-sclerosis cardiovascular-diseases colorectal-cancer huntingtons-disease pancreatic-cancer random-forest-classifier multivariate-data-analysis support-vector-classification osteoarthritis lung-cancer max-min-criterion maximization-of-mutual-information minimax-rate-optimal-estimator osteoarthritis-severity-detection cancer-of-the-uterus cervical-cancer breast-cancer prostate-cancer multiple-myeloma
Language:R
amatov / FragmentomicsSubclinicalDisease
breast-cancer gastric-cancer lung-cancer ovarian-cancer pancreatic-cancer bile-duct-cancer duodenal-cancer colon-adenoma colon-cancer deep-learning rectal-adenoma rectal-cancer early-detection sub-clinical-disease fragmentation-patterns fragmentomics dna-fragment-length whole-genome-sequencing identify-disease-stage early-detection-of-disease
Language:R