Stevie Yeh's repositories

Go-Books

Books about Nodejs, Angular2, Agile, Clean Code, Docker, Golang, Microservices, REST, TDD, BDD, and Startups.

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Bio-10X

Use Seurat,monocle etc in R to analysis 10X single cell dataset

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The-Elements-of-Statistical-Learning-Python-Notebooks

A series of Python Jupyter notebooks that help you better understand "The Elements of Statistical Learning" book

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10x-scATAC-2019

Code Repository for Satpathy Granja et al 2019

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awesome-automl-papers

A curated list of automated machine learning papers, articles, tutorials, slides and projects

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Bio-AlignAnalysis

Bio Align Anlysis(scRNA,wes etc)

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CATALYST

Cytometry dATa anALYsis Tools

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Class-balanced-loss-pytorch

Pytorch implementation of the paper "Class-Balanced Loss Based on Effective Number of Samples"

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Cluster_SingleCell_CellType

Use the method to auto classify cell type in single cell

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ComBat-seq

Batch effect adjustment based on negative binomial regression for RNA sequencing count data

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DeepLearning

深度学习入门教程&&优秀文章&&Deep Learning Tutorial

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dgl

Python package built to ease deep learning on graph, on top of existing DL frameworks.

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Dive-into-DL-PyTorch

本项目将《动手学深度学习》(Dive into Deep Learning)原书中的MXNet代码实现改为PyTorch实现。

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DoubletFinder

R package for detecting doublets in single-cell RNA sequencing data

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Genrich

Detecting sites of genomic enrichment

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model-zoo

Please do not feed the models

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MPAL-Single-Cell-2019

Publication Page for MPAL Paper 2019

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pbbioconda

PacBio Secondary Analysis Tools on Bioconda

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pyGenomeTracks

python module to plot beautiful and highly customizable genome browser tracks

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PyTorch-GAN

PyTorch implementations of Generative Adversarial Networks.

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Scanpy_LightGBM_10X

Use the Scanpy read 10X dataset and LightGBM run the model

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scATAC-pro

A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data

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scATAC_DeepLearning

Single-cell ATAC-seq analysis via Latent feature Extraction

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scCATCH_performance_comparison

The source code and results of performance comparison on the detail of the process among scCATCH, CellAssign, Garnett, SingleR, scMap and CHETAH, and CellMatch database

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scrublet

Detect doublets in single-cell RNA-seq data

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SnapATAC

Analysis Pipeline for Single Cell ATAC-seq

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SQANTI2

Private repo for Liz's modified SQANTI

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TheAlgorithms-Python

All Algorithms implemented in Python

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