reproducible-analysis

There are 2 repositories under reproducible-analysis topic.

• gpoore / codebraid

  Live code in Pandoc Markdown

  bashjavascriptjulia-languageliterate-programmingmarkdownpandoc-filterpandoc-markdownpythonr-languagereproducible-analysisreproducible-researchreproducible-workflowsrustrust-lang
  Language:Python 361
• awesome-reproducible-research

  leipzig / awesome-reproducible-research

  A curated list of reproducible research case studies, projects, tutorials, and media

  awesomeawesome-listreproducibilityreproducible-analysisreproducible-researchreproducible-sciencereproducible-workflows
  Language:Python 294

• Remi-Gau / eCobidas

  Working repository to turn the COBIDAS guidelines to report methods and results in neuroimaging into a user friendly checklist

  neuroimagingreproducibilityreproducible-analysischecklistfmrimrieegmegbrainwebpositron-emission-tomographytransparencyeyetrackingclosember
  Language:Jupyter Notebook 35

• XSLiuLab / tumor-immunogenicity-score

  TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020

  analysis-reportreproducible-analysismanuscripttumor-immunogenicityimmunotherapybiomarker-discovery
  Language:R 30

• smu160 / PvsNP

  a Python toolbox for reproducible analysis and visualization of NeuroPhysiological data.

  neuroscienceelectrophysiologycalcium-imagingpythonopen-sciencevideo-syncvisualizationreproducible-analysisneurophysiological-data
  Language:Python 9

• lemid / epidemioR

  Epidemiologia de Doenças de Plantas Aplicada com R

  statistical-analysisepidemiologyplant-diseaser-statsreproducible-analysis
  Language:TeX 6

• nuest / sensebox-binder

  A reproducible analysis of environmental data - from hardware to plot

  research-compendiumbinderjupyter-notebookreproducible-analysisreproducible-sciencereproducible-research
  Language:Jupyter Notebook 3

• holmesjoli / archiveR

  An R package for data archiving and linking with code

  rgitreproducibilityreproducible-researchreproducible-analysisreproducible-workflowsarchive
  Language:R 2

• rosalieb / AltStableStates

  Seeking alternative stable states in a deep lake (Bruel et al 2018) — reproduce analysis.

  reproducible-analysis
  Language:R 2

• sk-sahu / PGRB

  Practical Guide to Reproducibility in Bioinformatics (Work In Progress)

  reproducibilitybioinformaticsreproducible-sciencereproducible-analysisreproducible-researchworkflow-automationjupyter-notebookrmarkdowndockerbiocontainerscondaconda-environmentbiocondadomain-specific-language
  Language:Nextflow 2

• ccoolbaugh / SciRep-Coolbaugh-2019

  Code and data to recreate figures and analyses for our Scientific Reports paper "Cold exposure induces dynamic, heterogeneous alterations in human brown adipose tissue lipid content".

  thermoregulationcold-exposurebrown-adipose-tissuerr-markdownreproducible-analysismagnetic-resonance-imaging
  1

• holmesjoli / utilsR

  R utility functions

  rreproducible-researchreproducibilityreproducible-analysisreproducible-workflows
  Language:R 1

• maribelacosta / dief-notebooks

  Jupyter Notebooks to reproduce analysis with dief R package

  benchmarkingdiefdiefficiency-metricsefficiencyjupyter-notebookrreproducible-analysis
  Language:Jupyter Notebook 1

• Nelson-Gon / pycite

  Python Citations Generator

  academic-projectphdhtmlparserwebscrapingwebscrapercitationsharvardresearchresearch-toolhttpsbeautifulsoup4citations-generatorpypipaperspythonacademic-paperacademic-writingreproducible-researchreproducible-sciencereproducible-analysis
  Language:Python 1

• rhodesch / project-oriented-workflow

  Reproducible analysis with R, Python and Snakemake via Conda

  snakemakecondapythonrreproducible-analysisbioinformaticsconda-environments
  Language:Shell 1

• holmesjoli / archivePy

  A Python package for data archiving and linking with code

  pythongitpython3reproducibilityreproducible-researchreproducible-analysisreproducible-workflowsarchive
  Language:Python 0

• aschetti / ReproHack2019Leiden

  Reproducing the results reported in a preprint during ReproHack2019 (Leiden).

  osfrreproducibilityreproducible-analysisreprohack
  Language:HTML

• holmesjoli / ProgrammerKnowledgeBase

  A bookdown project of best programmer practices for intermediate R and Python programmers

  rpythongitreproducible-researchreproducibilityreproducible-analysisreproducible-workflowsefficiencybest-practices
  Language:HTML

• holmesjoli / utilsPy

  Python utility functions

  pythonpython-3reproducibilityreproducible-researchreproducible-analysisreproducible-workflows
  Language:Python